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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: spr1341
  • pan locus tag?:
  • symbol: spr1341
  • pan gene symbol?: —
  • synonym:
  • product: Degenerate transposase (orf1)

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: spr1341
  • symbol: spr1341
  • product: Degenerate transposase (orf1)
  • replicon: chromosome
  • strand: -
  • coordinates: 1325713..1325982
  • length: 270
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AE007317 (1325713..1325982) NCBI
  • BioCyc:
  • MicrobesOnline: 134225 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    GTGAACTGCACCCCAAAAGTTAGACAGAAAAAATCTAACTTTTGGGGTGTTTTTATTATG
    AAATTAACTTATGATGATAAAGTTCAGATCTATGAACTTAGAAAACAAGGATATAGCTTA
    GAGAAGCTTTCAAATAAATTTGGGATAAACAATTCTAATCTTAGGTACATGATTAAATTG
    ATTGATCATTACGGAATAGAGTTCGTCAAAAAAGGAAAAAATCGTTACTATTCTCCTGAT
    TTAAAACAAGAAATGATTCATAAAGTCTGA
    60
    120
    180
    240
    270

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: spr1341
  • symbol: spr1341
  • description: Degenerate transposase (orf1)
  • length: 89
  • theoretical pI: 10.3357
  • theoretical MW: 10741.5
  • GRAVY: -0.738202

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Mobile element protein
  • PFAM:
    HTH (CL0123) HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 18.2)
    MerR_1; MerR HTH family regulatory protein (PF13411; HMM-score: 17)
    HTH_35; Winged helix-turn-helix DNA-binding (PF13693; HMM-score: 16.6)
    and 3 more
    HTH_psq; helix-turn-helix, Psq domain (PF05225; HMM-score: 14.2)
    no clan defined CspB_prodomain; Csp protease B prodomain (PF18425; HMM-score: 13.8)
    HTH (CL0123) HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9076
    • Cytoplasmic Membrane Score: 0.0022
    • Cell wall & surface Score: 0.0037
    • Extracellular Score: 0.0865
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008187
    • TAT(Tat/SPI): 0.000203
    • LIPO(Sec/SPII): 0.000935
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNCTPKVRQKKSNFWGVFIMKLTYDDKVQIYELRKQGYSLEKLSNKFGINNSNLRYMIKLIDHYGIEFVKKGKNRYYSPDLKQEMIHKV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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