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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae R6
- locus tag: spr1560 [new locus tag: SPR_RS07740 ]
- pan locus tag?: PNEUPAN003139000
- symbol: spr1560
- pan gene symbol?: —
- synonym:
- product: Hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: spr1560 [new locus tag: SPR_RS07740 ]
- symbol: spr1560
- product: Hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1539872..1540720
- length: 849
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE007317 (1539872..1540720) NCBI
- BioCyc: SPR1560 BioCyc
- MicrobesOnline: 134444 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1526 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841ATGATATTCGCTACGAGTCAGGTGAATCCATTGACCAACTCTTCCGTCAGGAATTTAAGG
CCTAAGCAAAGGAGATTATTTATGTTTTGGAATTTAGTTCACTACGAATTTAAAAATGTT
AACAAGTGGTATTTAGCCCTCTACGCAGCCGTGCTAGTCCTTTCTGCCCTCATCGGAATA
CAGACACAAGGCTTTAAAAATCTACCTTACCAAGAAAGTCAGGCTACTATGCTACTTTTT
CTAGCTACAGTCTTTGGTGGCTTGATGCTTACACTTGCGATTTCAACCATTTTCTTGATT
ATTAAACGCTTCAAAGGTAGTGTCTACGACCGACAAGGCTATCTGACTTTGACCTTGCCA
GTTTCTGAACACCATATCATCACAGCCAAACTAATCGGTGCCTTTATCTGGTCATTGATT
AGCACCGCTGTATTGGCTCTAAGTGCTGTTATTATTCTGGCTTTAACAGCTCCAGAATGG
ATTCCTCTTTCTTATGTGATTACATTTGTAGAAACACATCTCCCTCAGATCTTTCTTACA
GGTATATCCTTCCTACTAAATACCATTTCAGGAATCCTCTGCATCTACCTGGCTATTTCC
ATTGGACAGCTTTTCAATGAATACCGTACAGCACTCGCTGTTGCAGTCTACATTGGTATC
CAAATCGTCATTGGATTTATTGAACTTTTCTTCAATCTTAGTTCTAATTTCTATGTCAAT
TCACTGGTAGGACTCAATGACCATTTCTATATGGGAGCAGGTATAGCCATTGTTGAAGAA
CTCATATTCATAGCTATCTTTTATCTCGGAACCTACTACATCTTGAGAAATAAGGTTAAT
TTGCTTTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
849
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: spr1560 [new locus tag: SPR_RS07740 ]
- symbol: spr1560
- description: Hypothetical protein
- length: 282
- theoretical pI: 9.47115
- theoretical MW: 31758.5
- GRAVY: 0.842908
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- hypothetical protein
- PFAM: PepSY_TM-like (CL0490) PepSY_TM; PepSY-associated TM region (PF03929; HMM-score: 13.9)ABC-2 (CL0181) ABC2_membrane_2; ABC-2 family transporter protein (PF12679; HMM-score: 13.4)ABC2_membrane_4; ABC-2 family transporter protein (PF12730; HMM-score: 11.9)and 1 moreABC2_membrane_5; ABC-2 family transporter protein (PF13346; HMM-score: 9.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0002
- Cytoplasmic Membrane Score: 0.9838
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.016
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004185
- TAT(Tat/SPI): 0.000289
- LIPO(Sec/SPII): 0.002431
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIFATSQVNPLTNSSVRNLRPKQRRLFMFWNLVHYEFKNVNKWYLALYAAVLVLSALIGIQTQGFKNLPYQESQATMLLFLATVFGGLMLTLAISTIFLIIKRFKGSVYDRQGYLTLTLPVSEHHIITAKLIGAFIWSLISTAVLALSAVIILALTAPEWIPLSYVITFVETHLPQIFLTGISFLLNTISGILCIYLAISIGQLFNEYRTALAVAVYIGIQIVIGFIELFFNLSSNFYVNSLVGLNDHFYMGAGIAIVEELIFIAIFYLGTYYILRNKVNLL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1526 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]