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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 19-NOV-2015
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae A66
- locus tag: A66_01226 [new locus tag: A66_RS06115 ]
- pan locus tag?: PNEUPAN002662000
- symbol: A66_01226
- pan gene symbol?: potD
- synonym:
- product: ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: A66_01226 [new locus tag: A66_RS06115 ]
- symbol: A66_01226
- product: ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)
- replicon: chromosome
- strand: -
- coordinates: 1198598..1199392
- length: 795
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: LN847353 (1198598..1199392) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1218 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGATTAACAAGATGAAGGACGAAGACCTCTTGGTTCCGCTTGATTATTCAAAAATTGAA
GGAATCGAAAATATCGGATCAGAGTTTCTCAACCAGTCCTTTGACCCAGGTAATAAATTC
TCCATCCCTTACTTCTGGGGAACCTTAGGAATTGTCTACAACGAAACCATGGTAGATGAA
GCGCCTGAGCATTGGGATGACCTTTGGAAGCCGGAGTATAAGAATTCTATCATGCTCTTT
GATGGGGCGCGTGAGGTGCTGGGACTAGGACTCAATTCCCTCGGCTACAGCCTCAACTCC
AAGGATCTGCAGCAGTTGGAAGAGACAGTGGATAAGCTCTACAAACTGACTCCAAATATC
AAGGCTATCGTTGCGGACGAGATGAAGGGCTACATGATTCAGAATAATGTTGCAATCGGC
GTGACCTTCTCTGGTGAAGCCAGCCAAATGTTAGAAAAAAATGAAAATCTACGTTATGTG
GTACCGACAGAGGCCAGCAATCTTTGGTTTGACAATATGGTCATTCCCAAAACAGTTAAA
AATCAAGACTCAGCCTATGCCTTTATCAACTTTATGTTGAAACCTGAAAACGCTCTCCAA
AATGCGGAGTATGTCGGCTATTCAACACCAAACCTACCAGCGAAGGAATTGCTCCCAGAG
GAAACAAAGGAAGATAAGGCCTTCTATCCCGATGTTGAAACCATGAAACACCTAGAAGTT
TATGAGAAATTTGACCATAAATGGACAGGGAAATATAGCGACCTCTTCCTACAGTTTAAA
ATGTATCGGAAGTAG60
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795
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: A66_01226 [new locus tag: A66_RS06115 ]
- symbol: A66_01226
- description: ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)
- length: 264
- theoretical pI: 4.42714
- theoretical MW: 30530.5
- GRAVY: -0.47803
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein (TIGR03261; HMM-score: 39.3)and 3 moreTransport and binding proteins Carbohydrates, organic alcohols, and acids carbohydrate ABC transporter substrate-binding protein, CPR_0540 family (TIGR03850; HMM-score: 23.5)Transport and binding proteins Other ABC transporter periplasmic binding protein, thiB subfamily (TIGR01254; HMM-score: 21)2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein (TIGR03227; HMM-score: 12.2)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: PBP (CL0177) SBP_bac_6; Bacterial extracellular solute-binding protein (PF13343; HMM-score: 116)SBP_bac_8; Bacterial extracellular solute-binding protein (PF13416; HMM-score: 100.9)and 2 moreSBP_bac_1; Bacterial extracellular solute-binding protein (PF01547; HMM-score: 35.6)SBP_bac_11; Bacterial extracellular solute-binding protein (PF13531; HMM-score: 23.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.4188
- Cytoplasmic Membrane Score: 0.0375
- Cell wall & surface Score: 0.009
- Extracellular Score: 0.5347
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006469
- TAT(Tat/SPI): 0.000248
- LIPO(Sec/SPII): 0.000611
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CRI61937 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MINKMKDEDLLVPLDYSKIEGIENIGSEFLNQSFDPGNKFSIPYFWGTLGIVYNETMVDEAPEHWDDLWKPEYKNSIMLFDGAREVLGLGLNSLGYSLNSKDLQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKPENALQNAEYVGYSTPNLPAKELLPEETKEDKAFYPDVETMKHLEVYEKFDHKWTGKYSDLFLQFKMYRK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1218 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]