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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 17-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae A66
- locus tag: A66_RS00500 [old locus tag: A66_00102 ]
- pan locus tag?: PNEUPAN000732000
- symbol: A66_RS00500
- pan gene symbol?: ptvC
- synonym:
- product: DUF6574 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: A66_RS00500 [old locus tag: A66_00102 ]
- symbol: A66_RS00500
- product: DUF6574 domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 94058..95122
- length: 1065
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_LN847353 (94058..95122) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0093 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021ATGAAACAAGAATGGTTTGAAAGTAATGATTTTGTAAAAACAACAAGCAAGAACAAGCCT
GAAGAGCAAGCTCAAGAGGTTGCAGACAAGGCTGAAGAAACGATAGCCGATCTCGATACA
CCAATTGGAAAAAATACTCAAGTAGAGGAGGAAGTCTCTCAAGCTGAAGTCGAACTGGAA
AGCCAGCAAGAAGAGAAAATTGAAACTCCTGAAGACAGTGAAGCGAGAACAGAAATAGAA
GAAAAGAAGGCATCTAATTCTACTGAAGAAGAGCCAGACCTTTCTAAAGAAACAGAAAAA
GTCACTATAGCTGAAGAGAGCCAAGAAGCTCTTCCTCAGCAAAAAGCAACCACGAAAGAG
CCACTTCTTATCAGTAAATCTTTAGAAAGTCCTTATATCCCCGACCAAGCTCCAAAATCT
AGGGATAAATGGAAAGAGCAAGTGCTTGATTTTTGGTCTTGGCTAGTGGAAGCGATCAAA
TCTCCTACAAGTAAGTTGGAAACAAGTATCACACACAGTTACACAGCCTTTCTCTTGCTC
ATTCTGTTTTCTACATCTTCCTTTTTCTTTAGTATCTATCACATCAAACATGCTTACTAT
GGACATATAGCAAGCATTAACAGTCGCTTCCCTGAGCAGCTAGCTCCTTTAACTCTTTTT
TCTATCATCTCTATCCTAGTAGCGACAACACTCTTCTTCTTTTCATTCCTCTTGGGTAGT
TTCGTTGTGAGACGATTTATCCACCAGGAAAAGGACTGGACGCTAGACAAGGTTCTCCAA
CAATATAGTCAACTCTTGGCAATTCCAATCTTCCTCACTGCTATTGCTAGTTTCTTTGCC
TTCTTTGATAGCCTACGATTTACAGCTCTCTTGTGTGTGATTAGCATTGGAATCATTCTG
CTTGCCAGTCTCCATATCATTACAAGACCAAGTCAAGCAAGTGAAACCGACTCCTTCTAT
CAATTATTCTTGTCTGTCCTTGTGAACGGAGTTATTATCCTCCTCTTCTTTGTAGCTGAA
GTGGCACTGATTGGAGATTATCTTCGTATCTTGGCCTTTCTTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: A66_RS00500 [old locus tag: A66_00102 ]
- symbol: A66_RS00500
- description: DUF6574 domain-containing protein
- length: 354
- theoretical pI: 4.40542
- theoretical MW: 40293.6
- GRAVY: 0.00621469
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: Zn_Beta_Ribbon (CL0167) DUF6574; Family of unknown function (DUF6574) (PF20214; HMM-score: 134.7)and 3 moreVir (CL0411) Plasmodium_Vir; Plasmodium vivax Vir protein (PF05795; HMM-score: 11.1)Acyl-CoA_desat (CL0713) FA_desaturase; Fatty acid desaturase (PF00487; HMM-score: 10.9)Yip1 (CL0112) DUF1129; Protein of unknown function (DUF1129) (PF06570; HMM-score: 6.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.99
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0098
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.007835
- TAT(Tat/SPI): 0.000992
- LIPO(Sec/SPII): 0.001772
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000808455 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKQEWFESNDFVKTTSKNKPEEQAQEVADKAEETIADLDTPIGKNTQVEEEVSQAEVELESQQEEKIETPEDSEARTEIEEKKASNSTEEEPDLSKETEKVTIAEESQEALPQQKATTKEPLLISKSLESPYIPDQAPKSRDKWKEQVLDFWSWLVEAIKSPTSKLETSITHSYTAFLLLILFSTSSFFFSIYHIKHAYYGHIASINSRFPEQLAPLTLFSIISILVATTLFFFSFLLGSFVVRRFIHQEKDWTLDKVLQQYSQLLAIPIFLTAIASFFAFFDSLRFTALLCVISIGIILLASLHIITRPSQASETDSFYQLFLSVLVNGVIILLFFVAEVALIGDYLRILAFL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0093 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]