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NCBI: 25-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: SPR_RS00475 [old locus tag: spr0086 ]
  • pan locus tag?: PNEUPAN000732000
  • symbol: SPR_RS00475
  • pan gene symbol?: ptvC
  • synonym:
  • product: DUF6574 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS00475 [old locus tag: spr0086 ]
  • symbol: SPR_RS00475
  • product: DUF6574 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 93718..94782
  • length: 1065
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAAACAAGAATGGTTTGAAAGTAATGATTTTGTAAAAACAACAAGCAAGAACAAGCCT
    GAAGAGCAAGCTCAAGAGGTTGCAGACAAGGCTGAAGAAACGATAGCCGATCTCGATACA
    CCAATTGAAAAAAATACTCAGTTAGAGGAGGAAGTCTCTCAAGCTGAAGTCGAATTGGAA
    AGCCAGCAAGAAGAGAAAATTGAAACTCCTGAAGACAGTGAAGCGAGAACAAAAATAGAA
    GAAAAGAAGGCATCTAATTCTACTGAAGAAGAGCCAGACCTTTCTAAAGAAACAGAAAAA
    GTCACTATAGCTGAAGAGAGCCAAGAAGCTCTTCCTCAGCAAAAAGCAACCACGAAAGAG
    CCACTTCTTATCAGTAAATCTTTAGAAAGTCCTTATATCCCCGACCAAGCTCCAAAATCT
    AGGGATAAATGGAAAGAGCAAGTGCTTGATTTTTGGTCTTGGCTAGTGGAAGCGATCAAA
    TCTCCTACAAGTAAGTTGGAAACAAGTATCACACACAGTTACACAGCCTTTCTCTTGCTC
    ATTCTGTTTTCTGCATCTTCCTTTTTCTTTAGTATCTATCACATCAAACATGCTTACTAT
    GGACATATAGCAAGCATTAACAGTCGCTTCCCTGAGCAGCTAGCTCCTTTAACTCTTTTT
    TCTATCGTCTCTATCCTAGTAGCGACAACACTCTTCTTCTTTTCATTCCTCTTGGGTAGT
    TTCGTTGTGAGACGATTTATCCACCAGGAAAAGGACTGGACGCTAGACAAGGTTCTCCAA
    CAATATAGTCAACTCTTGGCAATTCCAATCTTCCTCACTGCTATTGCTAGTTTCTTTGCT
    TTCTTTGATAGCCTACGATTTACAGCCCTCTTGTGTGTGATTAGCATTGGAATCATTCTG
    CTTGCCAGTCTCCATATCATTACAAGACCAAGTCAAGCAAGTGAAACCGACTCCTTCTAT
    CAATTATTCTTGTCTGTCCTTGTGAACGGAGTTATTATCCTCCTCTTCTTTGTAGCTGAA
    GTGGCACTGATTGGAGATTATCTTCGTATCTTGGCCTTTCTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1065

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPR_RS00475 [old locus tag: spr0086 ]
  • symbol: SPR_RS00475
  • description: DUF6574 domain-containing protein
  • length: 354
  • theoretical pI: 4.44519
  • theoretical MW: 40334.7
  • GRAVY: 0.00141243

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see spr0086
  • PFAM:
    Zn_Beta_Ribbon (CL0167) DUF6574; Family of unknown function (DUF6574) (PF20214; HMM-score: 132.7)
    and 2 more
    no clan defined DUF2976; Protein of unknown function (DUF2976) (PF11190; HMM-score: 11.7)
    Vir (CL0411) Plasmodium_Vir; Plasmodium vivax Vir protein (PF05795; HMM-score: 9.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9916
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0082
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007519
    • TAT(Tat/SPI): 0.000857
    • LIPO(Sec/SPII): 0.001396
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKQEWFESNDFVKTTSKNKPEEQAQEVADKAEETIADLDTPIEKNTQLEEEVSQAEVELESQQEEKIETPEDSEARTKIEEKKASNSTEEEPDLSKETEKVTIAEESQEALPQQKATTKEPLLISKSLESPYIPDQAPKSRDKWKEQVLDFWSWLVEAIKSPTSKLETSITHSYTAFLLLILFSASSFFFSIYHIKHAYYGHIASINSRFPEQLAPLTLFSIVSILVATTLFFFSFLLGSFVVRRFIHQEKDWTLDKVLQQYSQLLAIPIFLTAIASFFAFFDSLRFTALLCVISIGIILLASLHIITRPSQASETDSFYQLFLSVLVNGVIILLFFVAEVALIGDYLRILAFL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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