From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-SEP-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ASP0581
  • locus tag: ASP0581_05390 [new locus tag: EL334_RS02905 ]
  • pan locus tag?: PNEUPAN001455000
  • symbol: ASP0581_05390
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: ASP0581_05390 [new locus tag: EL334_RS02905 ]
  • symbol: ASP0581_05390
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 529215..531047
  • length: 1833
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AP019192 (529215..531047) NCBI
  • BioCyc: see EL334_RS02905
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGGACAATCAGATAATTGAGAGTTTAGAAGGAATAACTAAAAATTTTTTTAAAAATAAA
    AATCAATTTTATCCTTATATTGATTATATACGATTTCCTCATTACAAGAGCTTATCATTA
    AATTCAAGAATAAATTTTAATTTCCCTATTACTTTATTAGTTGGTAGAAATGGAGTAAAT
    AAAACTTCAATTTTACAAGCTTTATATGGTTCTCCAGCCAATAAAAGTGTGTCTGAATAT
    TGGTTTAGTACAAATGTTGATCAAATAGATGAAGTGGATGGGAAACAATGTTTAATCTAT
    TCATATTATAACATTAAAGCTTCTAGAAATGTAGAAGTTCTTAAAGGCCGTTCTGGAACA
    AAAAAAGGATTAGATTATTGGGAACCATATGCTCCTCAAAAACAATATGAGATGGAAAGA
    TTACCCAAAAATAAATATATTGGAAGTTCTTCGACAGACAGATGGGATGGCATTGAAAAA
    AATGTTGTCTTTTGTGATTGTAAAGAATATGTTTCTGCTTTTGATTTATTTTTCTATCAC
    TATAATTTTAAAAAAATTTCTACTCAACGTAGTAAACAAGATTTTATAAGATTACGATCT
    AAACCAGTTGCTGATATTTTAAAGAATAATACAAGTAGCTATACGCGTTATAAAAAGGAA
    ATGGTTATAGATAATGTTAAAGTTGATGATAAAGTTTGTGAAATTATTAGTGAAATAATG
    GATGAATCTTATACAGACATTCAAATTTTAACACATAAGTTGTATTCAAAAGGTGATGAT
    ATAAAAGCTTCCAAAACTATTTGGATGAAAAAATCTGGAAAAGAATATTCCGAGGCTTTT
    GCAGGAACAGGTGAGGCTAGAATTATTTTGTTAGTAAATGATATAGTAAATGCGCAATCA
    AATTCATTAATATTAATAGATGAACCTGAAATCTCACTTCATCCGAGTGCAATCTATAAA
    TTTAAAGAGTTTTTACTTCAAGAGTGTTTAAATAAAAAACATCAAATTATTATCACTACA
    CATTCTACACAACTTATAAAAGATTTTCCTAGAGAAGCCGTGAAACTTTTAGTGAAAAAC
    GGAGAAAAGGTAGATGTTATTGAAAATATTGATTATCAGGATGCATTTTTTGAATTAGGT
    GATGTGTATCATTCTAGGAAGATGATTTATGTTGAAGATAGACTAGCTAAATATATTCTA
    GAGTTTGTTATCACTCATTCAGGTAGTGAGAATCTTAAACAGAATTTAGTAGTGAGATAT
    ATTCCTGGTGGAGCAAATCAAATAATTTGTAATAATATTTTAAACTCATCGTATTTAGAT
    TCCGATAACCATTATTTTTGGCTTGATGGAGATCAAAACACTAATGTTAGTGAATCAAAT
    AATTTAATGAACTATCTTGAAAATGGTGTTGTTATATCAGATAAAATTCCTGAATCAGAT
    AATAAAAATCTTGATGATATTATAAAATTGATAACGGGATGTCCAATTAAATTTAATGTT
    TCAGGTAATAAAGGGCAAAAAAATAATATTGAATTAATTGCGAAACAAAGAAGCTTTATA
    GATTATTGGGCTAAATACGTTTCTTATCTTCCTTTCCCAACCCCAGAGTTTTTTTTAGCT
    AATTTGTGTAACAGCGTAGATAGGGAAGGTTATGATTTTTCTAAAGATGGCAACGGAAAA
    GAATATTTTAGAAAAAAAACTCAAGTAGCGTTAGGAATAGAGAATATAACTTCTGAAGAT
    ATTTTCCAGGAGCAAAGAAGAGCTGTTTCAAAAATACAGCCAGAATCATCAATGTTTCAG
    TGTATTAAAGAAAAATTAGAGGCATTGTTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1833

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: ASP0581_05390 [new locus tag: EL334_RS02905 ]
  • symbol: ASP0581_05390
  • description: hypothetical protein
  • length: 610
  • theoretical pI: 6.98078
  • theoretical MW: 70625.7
  • GRAVY: -0.480164

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 20.9)
    Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 20.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 19.4)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 18.3)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 17.6)
    Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 17.6)
    and 8 more
    Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 16.3)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 16.3)
    Cellular processes Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 15.7)
    Metabolism Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 15.7)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 14.6)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 13.3)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 12)
    thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 9.9)
  • TheSEED: data available for Hungary19A-6, TIGR4
  • PFAM:
    P-loop_NTPase (CL0023) AAA_15; AAA ATPase domain (PF13175; HMM-score: 68.4)
    AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 60.2)
    and 3 more
    SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 23.4)
    DUF2813; Protein of unknown function (DUF2813) (PF11398; HMM-score: 22.7)
    AAA_23; AAA domain (PF13476; HMM-score: 18.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.1201
    • Cytoplasmic Membrane Score: 0.0705
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.8086
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006675
    • TAT(Tat/SPI): 0.000193
    • LIPO(Sec/SPII): 0.000753
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG81061 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDNQIIESLEGITKNFFKNKNQFYPYIDYIRFPHYKSLSLNSRINFNFPITLLVGRNGVNKTSILQALYGSPANKSVSEYWFSTNVDQIDEVDGKQCLIYSYYNIKASRNVEVLKGRSGTKKGLDYWEPYAPQKQYEMERLPKNKYIGSSSTDRWDGIEKNVVFCDCKEYVSAFDLFFYHYNFKKISTQRSKQDFIRLRSKPVADILKNNTSSYTRYKKEMVIDNVKVDDKVCEIISEIMDESYTDIQILTHKLYSKGDDIKASKTIWMKKSGKEYSEAFAGTGEARIILLVNDIVNAQSNSLILIDEPEISLHPSAIYKFKEFLLQECLNKKHQIIITTHSTQLIKDFPREAVKLLVKNGEKVDVIENIDYQDAFFELGDVYHSRKMIYVEDRLAKYILEFVITHSGSENLKQNLVVRYIPGGANQIICNNILNSSYLDSDNHYFWLDGDQNTNVSESNNLMNYLENGVVISDKIPESDNKNLDDIIKLITGCPIKFNVSGNKGQKNNIELIAKQRSFIDYWAKYVSYLPFPTPEFFLANLCNSVDREGYDFSKDGNGKEYFRKKTQVALGIENITSEDIFQEQRRAVSKIQPESSMFQCIKEKLEALF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=ASP0581_05390&oldid=47229"