From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-SEP-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ASP0581
  • locus tag: ASP0581_12070 [new locus tag: EL334_RS06430 ]
  • pan locus tag?: PNEUPAN002492000
  • symbol: zwf
  • pan gene symbol?: zwf
  • synonym:
  • product: glucose-6-phosphate 1-dehydrogenase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: ASP0581_12070 [new locus tag: EL334_RS06430 ]
  • symbol: zwf
  • product: glucose-6-phosphate 1-dehydrogenase
  • replicon: chromosome
  • strand: +
  • coordinates: 1206839..1208326
  • length: 1488
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGTCATCTAAGGTTATTGTTACAATTTTCGGTGCGAGTGGAGACCTGGCTAAACGCAAG
    CTCTACCCTTCCCTTTTTAGACTATATAAATCCGGCAATCTTTCCAAGCACTTTGCCGTT
    ATTGGAACTGCCCGTAGACCTTGGAGTAAGGAATATTTTGAATCTGTAGTTGTCGAGTCC
    ATCCTTGATTTGGCAGATAGTACCGAGCAAGCCCAAGAATTTGCTAGCCACTTCTACTAT
    CAAAGCCATGATGTCAATGATTCGGAACATTATATTGCTTTGCGTCAATTACAAGCTGAG
    CTTAATGAAAAATACCAAGCTGAACACAATAAGCTCTTCTTCTTGTCTATGGCACCTCAG
    TTCTTTGGAACCATTGCCAAACACCTCAAATCTGAAAACATTGTCGATGGCAAAGGTTTT
    GAGCGCTTGATCGTTGAAAAACCATTTGGTACAGATTACGCAACTGCAAGCAAGTTGAAT
    GACGAACTCCTAGCAACATTTGACGAAGAACAAATTTTCCGTATCGACCATTATCTTGGT
    AAGGAAATGATCCAAAGCATCTTTGCAGTTCGCTTTGCAAACTTGATTTTTGAAAACGTT
    TGGAACAAGGATTTTATCGACAATGTTCAAATTACCTTTGCGGAGCGCTTGGGTGTAGAA
    GAACGTGGTGGCTACTATGACCAATCCGGTGCCCTCCGTGACATGGTCCAAAACCACACT
    CTACAACTTCTTTCGCTTCTCGCCATGGACAAACCAGCAAGCTTCACAAAAGACGAGATT
    CGTGCTGAAAAGATTAAGGTCTTTAAAAACCTCTATCATCCAACTGATGAAGAACTCAAA
    GAACACTTTATCCGTGGGCAATACCGCTCTGGTAAGATTGATGGCATGAAATACATCTCT
    TATCGTAGCGAGCCAAATGTGAATCCAGAATCAACAACTGAAACCTTTACATCTGGTGCC
    TTCTTTGTAGACAGCGATCGATTCCGTGGTGTTCCTTTCTTTTTCCGTACAGGTAAACGA
    CTGACTGAAAAAGGAACTCATGTCAACATCGTCTTTAAACAAATGGATTCTATCTTTGGA
    GAACCACTTGCTCCAAATATTTTGACCATCTATATTCAACCAACAGAAGGCTTCTCTCTT
    AGCCTAAATGGGAAGCAAGTAGGAGAAGAATTTAACTTGACTCCTAACTCACTTGATTAT
    CGTACAGACGCGACTGCAACTGGTGCTTCTCCAGAACCATACGAAAAATTGATTTATGAT
    GTCCTAAATAACAACTCAACTAACTTTAGCCACTGGGATGAAGTTGGTGCGTCATGGAAG
    TTGATTGATCGTATTGAAAAGCTCTGGGCTGAAAATGGTGCCCCACTTCATGACTATAAA
    GCTGGAAGCATGGGACCTCAAGCCAGCTTTGACCTACTTGAAAAATTCGGTGCCAAATGG
    ACTTGGCAACCAGATATCGCCTATCGTCAAGATGGTCGCTTAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1488

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: ASP0581_12070 [new locus tag: EL334_RS06430 ]
  • symbol: Zwf
  • description: glucose-6-phosphate 1-dehydrogenase
  • length: 495
  • theoretical pI: 5.51274
  • theoretical MW: 56743.4
  • GRAVY: -0.458384

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Pentose phosphate pathway glucose-6-phosphate dehydrogenase (TIGR00871; EC 1.1.1.49; HMM-score: 556.5)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    GADPH_aa-bio_dh (CL0139) G6PD_C; Glucose-6-phosphate dehydrogenase, C-terminal domain (PF02781; HMM-score: 353)
    and 2 more
    NADP_Rossmann (CL0063) G6PD_N; Glucose-6-phosphate dehydrogenase, NAD binding domain (PF00479; HMM-score: 199.5)
    S11_L18p (CL0267) Host_attach; Protein required for attachment to host cells (PF10116; HMM-score: 13.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8448
    • Cytoplasmic Membrane Score: 0.0208
    • Cell wall & surface Score: 0.0063
    • Extracellular Score: 0.1281
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00398
    • TAT(Tat/SPI): 0.000409
    • LIPO(Sec/SPII): 0.001829
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG81729 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSSKVIVTIFGASGDLAKRKLYPSLFRLYKSGNLSKHFAVIGTARRPWSKEYFESVVVESILDLADSTEQAQEFASHFYYQSHDVNDSEHYIALRQLQAELNEKYQAEHNKLFFLSMAPQFFGTIAKHLKSENIVDGKGFERLIVEKPFGTDYATASKLNDELLATFDEEQIFRIDHYLGKEMIQSIFAVRFANLIFENVWNKDFIDNVQITFAERLGVEERGGYYDQSGALRDMVQNHTLQLLSLLAMDKPASFTKDEIRAEKIKVFKNLYHPTDEELKEHFIRGQYRSGKIDGMKYISYRSEPNVNPESTTETFTSGAFFVDSDRFRGVPFFFRTGKRLTEKGTHVNIVFKQMDSIFGEPLAPNILTIYIQPTEGFSLSLNGKQVGEEFNLTPNSLDYRTDATATGASPEPYEKLIYDVLNNNSTNFSHWDEVGASWKLIDRIEKLWAENGAPLHDYKAGSMGPQASFDLLEKFGAKWTWQPDIAYRQDGRLE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=ASP0581_12070&oldid=47901"