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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 09-DEC-2016
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SP49
- locus tag: BMJ42_00028 [new locus tag: BMJ42_RS00130 ]
- pan locus tag?: PNEUPAN000390000
- symbol: BMJ42_00028
- pan gene symbol?: —
- synonym:
- product: phage protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: BMJ42_00028 [new locus tag: BMJ42_RS00130 ]
- symbol: BMJ42_00028
- product: phage protein
- replicon: chromosome
- strand: -
- coordinates: 25723..26103
- length: 381
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP018136 (25723..26103) NCBI
- BioCyc: see BMJ42_RS00130
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGACACTCGCTAAACTCTGCGAAGAATATCAAGTAGAGCTTTGTCTCTTCGACGGTTCA
AACTGGCACAGTAGCGGTTTCTACAATCCAGACACAAACGTACTCGCTATTGACCACAAC
TTAGCTCCTGAACAACAAATCCAAGTCGCCCTACACGAACTCGGACACAAAGACCATACA
CGCTCAGAGTACCAAAACGCTCGCCTACGCTGTGAAAACGAAGCTGATAGGAATATGATC
CATCATCTCGTGAAAGACGCACTAGAAAGCTTAGACGACCCCACAGAGTTTGATTACCTC
AAATTCATGTCTTACTACAATCTAAAAACTATGACTAATGAAGTCATGGTCAAGGAAGAG
TACTTGGCATTAGTAAATTAA60
120
180
240
300
360
381
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: BMJ42_00028 [new locus tag: BMJ42_RS00130 ]
- symbol: BMJ42_00028
- description: phage protein
- length: 126
- theoretical pI: 4.55796
- theoretical MW: 14754.4
- GRAVY: -0.571429
⊟Function[edit | edit source]
- TIGRFAM: M6 family metalloprotease domain (TIGR03296; EC 3.4.24.-; HMM-score: 12.4)
- TheSEED:
- PFAM: Peptidase_MA (CL0126) Peptidase_M78; IrrE N-terminal-like domain (PF06114; HMM-score: 30.3)no clan defined DUF6782; Putative metallopeptidase family (DUF6782) (PF20573; HMM-score: 29.5)and 1 moreDUF3775; Protein of unknown function (DUF3775) (PF12616; HMM-score: 12.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.8839
- Cytoplasmic Membrane Score: 0.0021
- Cell wall & surface Score: 0.0007
- Extracellular Score: 0.1133
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004589
- TAT(Tat/SPI): 0.000159
- LIPO(Sec/SPII): 0.000956
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: APJ29371 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTLAKLCEEYQVELCLFDGSNWHSSGFYNPDTNVLAIDHNLAPEQQIQVALHELGHKDHTRSEYQNARLRCENEADRNMIHHLVKDALESLDDPTEFDYLKFMSYYNLKTMTNEVMVKEEYLALVN
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]