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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 09-DEC-2016

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SP49
  • locus tag: BMJ42_00843 [new locus tag: BMJ42_RS04515 ]
  • pan locus tag?: PNEUPAN001743000
  • symbol: BMJ42_00843
  • pan gene symbol?: fabG2
  • synonym:
  • product: short chain dehydrogenase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: BMJ42_00843 [new locus tag: BMJ42_RS04515 ]
  • symbol: BMJ42_00843
  • product: short chain dehydrogenase
  • replicon: chromosome
  • strand: +
  • coordinates: 785410..786108
  • length: 699
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGACTAAACGTGTACTTATTACAGGAGTGAGTTCAGGTATCGGATTGGCTCAGGCTCGA
    CTCTTTTTAGAGAAGGGCTTTCAAGTTTATGGAGTTGACCAAGGTGAAAATCCACTCTTA
    GAGGGTGATTTCCATTTTTTACAGAGAGATTTGACCTTGGACTTGGAACCTATTTTTGGC
    TGGTGCCCTCAGGTGGATGTTTTGTGTAATACTGCTGGAGTTTTGGATGATTACAAACCA
    CTGTTGGAACAGACTGCGCAGGAAATTCAAGAGATTTTTGAAATTAACTACATGACTCCT
    GTTGAGTTGACTCGGTATTATTTGACACAAATGCTGGAAAATAAAAAGGGAATCATCATC
    AATATGTGTTCCATTGCTTCTAGCCTAGCAGGTGGAGGTGGTCACGCCTATACTTCATCC
    AAGCATGCCTTGGCTGGCTTCACCAAGCAGTTGGCTCTAGACTATGCTGAAGCTGGGATT
    CAGGTCTTTGGGATTGCTCCAGGAGCAGTCAAGACGGCTATGACCGCTGCGGATTTTGAG
    CCAGGTGGCTTAGCTGACTGGGTGGCTAGTGAAACACCAATCAAGCGCTGGATTGAACCA
    GAGGAAGTGGCAGAAGTCAGTCTCTTTTTGGCCAGTGGAAAGGCATCTGCCATGCAAGGA
    CAAATCTTGACAATAGATGGTGGCTGGTCTTTGAAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    699

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: BMJ42_00843 [new locus tag: BMJ42_RS04515 ]
  • symbol: BMJ42_00843
  • description: short chain dehydrogenase
  • length: 232
  • theoretical pI: 4.3591
  • theoretical MW: 25152.6
  • GRAVY: 0.0931034

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase (TIGR01830; EC 1.1.1.100; HMM-score: 127.3)
    3-hydroxybutyrate dehydrogenase (TIGR01963; HMM-score: 126.1)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides 2-deoxy-D-gluconate 3-dehydrogenase (TIGR01832; EC 1.1.1.125; HMM-score: 107.5)
    and 12 more
    Unknown function Enzymes of unknown specificity SDR family mycofactocin-dependent oxidoreductase (TIGR04504; EC 1.1.99.-; HMM-score: 101.5)
    2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (TIGR04316; EC 1.3.1.28; HMM-score: 101)
    acetoacetyl-CoA reductase (TIGR01829; EC 1.1.1.36; HMM-score: 100.5)
    Unknown function Enzymes of unknown specificity SDR family mycofactocin-dependent oxidoreductase (TIGR03971; EC 1.1.99.-; HMM-score: 97.9)
    Metabolism Energy metabolism Fermentation acetoin reductases (TIGR02415; EC 1.1.1.-; HMM-score: 91.8)
    2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (TIGR03206; EC 1.1.1.-; HMM-score: 76.3)
    cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (TIGR03325; EC 1.3.1.56; HMM-score: 64.1)
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis putative 3-oxoacyl-(acyl-carrier-protein) reductase (TIGR01831; HMM-score: 60.8)
    rhamnulose-1-phosphate aldolase/alcohol dehydrogenase (TIGR02632; EC 1.1.1.1,4.1.2.19; HMM-score: 56.6)
    pteridine reductase (TIGR02685; EC 1.5.1.33; HMM-score: 50.6)
    sepiapterin reductase (TIGR01500; EC 1.1.1.153; HMM-score: 21.3)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Chlorophyll and bacteriochlorphyll light-dependent protochlorophyllide reductase (TIGR01289; EC 1.3.1.33; HMM-score: 13.5)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    NADP_Rossmann (CL0063) adh_short_C2; Enoyl-(Acyl carrier protein) reductase (PF13561; HMM-score: 150.9)
    adh_short; short chain dehydrogenase (PF00106; HMM-score: 133.2)
    and 2 more
    Eno-Rase_NADH_b; NAD(P)H binding domain of trans-2-enoyl-CoA reductase (PF12242; HMM-score: 13.2)
    Epimerase; NAD dependent epimerase/dehydratase family (PF01370; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9759
    • Cytoplasmic Membrane Score: 0.0012
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0227
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.112525
    • TAT(Tat/SPI): 0.008455
    • LIPO(Sec/SPII): 0.029466
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: APJ30164 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTKRVLITGVSSGIGLAQARLFLEKGFQVYGVDQGENPLLEGDFHFLQRDLTLDLEPIFGWCPQVDVLCNTAGVLDDYKPLLEQTAQEIQEIFEINYMTPVELTRYYLTQMLENKKGIIINMCSIASSLAGGGGHAYTSSKHALAGFTKQLALDYAEAGIQVFGIAPGAVKTAMTAADFEPGGLADWVASETPIKRWIEPEEVAEVSLFLASGKASAMQGQILTIDGGWSLK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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