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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 14-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae NCTC7466
- locus tag: DQM66_RS10750 [old locus tag: NCTC7466_02064 ]
- pan locus tag?: PNEUPAN003912000
- symbol: raiA
- pan gene symbol?: hpf
- synonym:
- product: ribosome-associated translation inhibitor RaiA
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: DQM66_RS10750 [old locus tag: NCTC7466_02064 ]
- symbol: raiA
- product: ribosome-associated translation inhibitor RaiA
- replicon: chromosome
- strand: -
- coordinates: 2012627..2013175
- length: 549
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_LS483374 (2012627..2013175) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_2033 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481
541ATGATTAAATATAGTATCCGTGGTGAAAACCTAGAAGTAACAGAAGCAATTCGTGATTAT
GTAGTTTCTAAACTCGAAAAGATCGAAAAGTACTTCCAACCAGAACAAGAGTTGGATGCC
CGAATTAACTTAAAAGTTTATCGTGAAAAAACGGCTAAAGTGGAAGTAACGATTCCGCTT
GGATCTATTACTCTCCGCGCAGAAGATGTATCTCAAGATATGTATGGTTCAATTGACCTT
GTAACTGATAAAATTGAACGTCAGATTCGTAAAAATAAAACAAAAATCGAGCGTAAAAAT
AAAAATAAGGTAGCAACTGGTCAATTATTTACAGATGCTTTGGTGGAAGATTCAAATATT
GTCCAGTCTAAAGTTGTTCGTTCAAAACAAATTGATTTAAAACCAATGGATTTGGAAGAA
GCAATTCTACAAATGGATTTATTGGGGCATGATTTCTTTATCTATGTGGATGTTGAAGAT
CAGACAACCAATGTGATTTATCGTCGTGAGGATGGCGAAATTGGTTTGTTAGAGGTTAAA
GAATCTTAA60
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549
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: DQM66_RS10750 [old locus tag: NCTC7466_02064 ]
- symbol: RaiA
- description: ribosome-associated translation inhibitor RaiA
- length: 182
- theoretical pI: 4.80433
- theoretical MW: 21099
- GRAVY: -0.506593
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Translation factors ribosomal subunit interface protein (TIGR00741; HMM-score: 96.7)and 2 moreEnergy metabolism ATP-proton motive force interconversion Na,H/K antiporter P-type ATPase, alpha subunit (TIGR01106; EC 3.6.3.-; HMM-score: 14.6)Protein synthesis tRNA aminoacylation serine--tRNA ligase (TIGR00414; EC 6.1.1.11; HMM-score: 11.8)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: RNase_H (CL0219) Ribosomal_S30AE; Sigma 54 modulation protein / S30EA ribosomal protein (PF02482; HMM-score: 92.7)no clan defined Ribosom_S30AE_C; Sigma 54 modulation/S30EA ribosomal protein C terminus (PF16321; HMM-score: 86.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001454
- TAT(Tat/SPI): 0.001239
- LIPO(Sec/SPII): 0.000222
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000599104 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MIKYSIRGENLEVTEAIRDYVVSKLEKIEKYFQPEQELDARINLKVYREKTAKVEVTIPLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIERKNKNKVATGQLFTDALVEDSNIVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQTTNVIYRREDGEIGLLEVKES
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2033 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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