From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 16-MAY-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae EF3030
  • locus tag: EF3030_01730 [new locus tag: EF3030_RS01730 ]
  • pan locus tag?: PNEUPAN000102000
  • symbol: rfbA
  • pan gene symbol?: cps2L
  • synonym:
  • product: glucose-1-phosphate thymidylyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EF3030_01730 [new locus tag: EF3030_RS01730 ]
  • symbol: rfbA
  • product: glucose-1-phosphate thymidylyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 317498..318367
  • length: 870
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAAAGGTATTATTCTAGCAGGTGGTTCGGGGACACGTTTATATCCTTTGACTCGCGCT
    GCATCAAAACAACTTATGCCGGTTTATGATAAACCGATGATTTACTACCCACTTTCAACA
    TTGATGTTGGCTGGGATTAGGGATATTTTGATTATTTCCACTCCACAGGATTTACATCGA
    TTCCAAGAGCTTCTTCAAGACGGATCTGAGTTTGGGCTCAAACTTTCTTATGCAGAGCAA
    CCAAGTCCAGATGGTTTGGCACAAGCCTTTATCATTGGGGAAGAGTTTATTTCTGATGAT
    AGCGTTGCGCTGATCTTAGGTGACAATATCTATCACGGTTCTGGGCTTTCCAAGATGCTA
    CAAAAGGCAGCGAGTAAGGAGTCGGGAGCAACTGTTTTTGGCTACCATGTCAAGGATCCA
    GAGCGCTTTGGTGTGGTTGAGTTTGATCAGGATATGAAGGCTATTTCTATTGAAGAAAAG
    CCAGAGCAACCTCGTTCAAACTATGCAGTTACAGGTCTCTATTTCTATGATAATGATGTA
    GTAGAGATTGCCAAGAGTATTAAACCAAGTCCTCGTGGTGAACTGGAAATTACAGATGTA
    AACAAGGCTTACCTAGATCGTGGTGATTTGTCTGTTGAGCTTATGGGACGTGGCTTTGCT
    TGGCTGGATACTGGAACTCATGAAAGTTTACTAGAGGCTTCACAGTACATCGAAACAGTG
    CAACGGATGCAAAATGTTCAGGTAGCAAACTTAGAAGAAATTGCTTACCGTATGGGCTAT
    ATCAGTCGAGAAGATGTATTGGCCTTAGCCCAACCACTTAAGAAAAATGAATACGGACAG
    TATCTGCTCCGTTTGATTGGAGAAGCATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    870

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EF3030_01730 [new locus tag: EF3030_RS01730 ]
  • symbol: RfbA
  • description: glucose-1-phosphate thymidylyltransferase
  • length: 289
  • theoretical pI: 4.57254
  • theoretical MW: 32216.5
  • GRAVY: -0.212457

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.7.24?  ExPASy
    Glucose-1-phosphate thymidylyltransferase dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-alpha-D-glucose
  • TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides glucose-1-phosphate thymidylyltransferase (TIGR01207; EC 2.7.7.24; HMM-score: 507.1)
    and 13 more
    glucose-1-phosphate thymidylyltransferase (TIGR01208; EC 2.7.7.24; HMM-score: 205.8)
    UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (TIGR03992; EC 2.3.1.157,2.7.7.23; HMM-score: 155.5)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides UTP--glucose-1-phosphate uridylyltransferase (TIGR01099; EC 2.7.7.9; HMM-score: 89.9)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides glucose-1-phosphate adenylyltransferase (TIGR02091; EC 2.7.7.27; HMM-score: 62.8)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (TIGR01173; EC 2.3.1.157,2.7.7.23; HMM-score: 43)
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (TIGR01173; EC 2.3.1.157,2.7.7.23; HMM-score: 43)
    Metabolism Central intermediary metabolism Amino sugars UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (TIGR01173; EC 2.3.1.157,2.7.7.23; HMM-score: 43)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides glucose-1-phosphate cytidylyltransferase (TIGR02623; EC 2.7.7.33; HMM-score: 34.1)
    Signal transduction Regulatory functions Protein interactions regulatory protein GalF (TIGR01105; HMM-score: 32.3)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (TIGR01479; EC 2.7.7.13,5.3.1.8; HMM-score: 21.9)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (TIGR00453; EC 2.7.7.60; HMM-score: 21.8)
    Hypothetical proteins Conserved TIGR00454 family protein (TIGR00454; HMM-score: 19.3)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides glucose-1-phosphate adenylyltransferase, GlgD subunit (TIGR02092; EC 2.7.7.27; HMM-score: 12.1)
  • TheSEED: data available for D39, Hungary19A-6
  • PFAM:
    GT-A (CL0110) NTP_transferase; Nucleotidyl transferase (PF00483; HMM-score: 244.7)
    and 2 more
    NTP_transf_3; MobA-like NTP transferase domain (PF12804; HMM-score: 41)
    IspD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (PF01128; HMM-score: 13.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8662
    • Cytoplasmic Membrane Score: 0.1018
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0317
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.023397
    • TAT(Tat/SPI): 0.000788
    • LIPO(Sec/SPII): 0.007696
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: QBF68366 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKGIILAGGSGTRLYPLTRAASKQLMPVYDKPMIYYPLSTLMLAGIRDILIISTPQDLHRFQELLQDGSEFGLKLSYAEQPSPDGLAQAFIIGEEFISDDSVALILGDNIYHGSGLSKMLQKAASKESGATVFGYHVKDPERFGVVEFDQDMKAISIEEKPEQPRSNYAVTGLYFYDNDVVEIAKSIKPSPRGELEITDVNKAYLDRGDLSVELMGRGFAWLDTGTHESLLEASQYIETVQRMQNVQVANLEEIAYRMGYISREDVLALAQPLKKNEYGQYLLRLIGEA

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=EF3030_01730&oldid=15819"