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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae EF3030
  • locus tag: EF3030_RS08355 [old locus tag: EF3030_08355 ]
  • pan locus tag?: PNEUPAN003195000
  • symbol: EF3030_RS08355
  • pan gene symbol?: epsJ_2
  • synonym:
  • product: glycosyltransferase family 2 protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EF3030_RS08355 [old locus tag: EF3030_08355 ]
  • symbol: EF3030_RS08355
  • product: glycosyltransferase family 2 protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1596440..1597117
  • length: 678
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP035897 (1596440..1597117) NCBI
  • BioCyc: EF3030_RS08355 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGGGGATTAGTGTAGCTAAGGGAGAGTACATCACGATTGTTGATTCAGATGATATCGTA
    AAAGAAAATATGATTGAAACTCTTTATCAGCAAGTCCAAGAAAAGGATGCAGATGTTGTT
    ATAGGGAATTACTATAATTATGACGAAAGTGACGGGAATTTTTATTTTTATGTAACAGGG
    CAAGATTTTTGCGTCGAAGAATTAGCTATACAAGAAATTATGAACCATCAAGCAGGAGAT
    TGGAAATTCAATAGCTCGGCCTTTATATTGCCGACATTTAAGTTGATTAAAAAAGAATTA
    TTCAATGAAGTTCACTTTTCAAATGGTCGCCGCTTTGATGATGAAGCAACTATGCATCGC
    TTTTATCTTTTAGCCTCTAAAATCGTCTTTATAAACGATAATCTCTATCTGTATAGAAGA
    CGTTCAGGAAGCATCATGAGAACGGAATTTGATCTTTCCTGGGCAAGAGATATTGTTGAA
    GTGTTTTCTAAGAAAATATCGGATTGTGTCTTGGCTGGTTTGGATGTCTCCGTTCTGCGT
    ATTCGATTTGTCAATCTTTTAAAAGATTATAAGCAAACTTTAGAATACCATCAATTAACA
    GATACTGAGGAATATAAAGATATTTGTTTCAGATTAAAGTTGTTTTTTGATGCAGAACAA
    AGAAATGGTAAAAGTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    678

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EF3030_RS08355 [old locus tag: EF3030_08355 ]
  • symbol: EF3030_RS08355
  • description: glycosyltransferase family 2 protein
  • length: 225
  • theoretical pI: 4.71338
  • theoretical MW: 26510.8
  • GRAVY: -0.318222

⊟Function[edit | edit source]

  • reaction:
    EC 2.4.-.-?  ExPASy
  • TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides rhamnosyltransferase (TIGR01556; EC 2.4.1.-; HMM-score: 14.9)
  • TheSEED: data available for Hungary19A-6, TIGR4
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 41.6)
    and 3 more
    Glyco_transf_21; Glycosyl transferase family 21 (PF13506; HMM-score: 18)
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 14.4)
    Glyco_trans_2_3; Glycosyl transferase family group 2 (PF13632; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.6128
    • Cytoplasmic Membrane Score: 0.1951
    • Cell wall & surface Score: 0.0014
    • Extracellular Score: 0.1907
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00757
    • TAT(Tat/SPI): 0.000335
    • LIPO(Sec/SPII): 0.001389
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_071478829 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MGISVAKGEYITIVDSDDIVKENMIETLYQQVQEKDADVVIGNYYNYDESDGNFYFYVTGQDFCVEELAIQEIMNHQAGDWKFNSSAFILPTFKLIKKELFNEVHFSNGRRFDDEATMHRFYLLASKIVFINDNLYLYRRRSGSIMRTEFDLSWARDIVEVFSKKISDCVLAGLDVSVLRIRFVNLLKDYKQTLEYHQLTDTEEYKDICFRLKLFFDAEQRNGKS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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