PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

NCBI: 12-MAY-2020

⊟Summary

• organism: Streptococcus pneumoniae 6A-10
• locus tag: HKM25_1746 [new locus tag: HKM25_RS08545 ]
• pan locus tag^?: PNEUPAN003134000
• symbol: HKM25_1746
• pan gene symbol^?: dnaI
• synonym:
• product: istB-like ATP binding family protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: HKM25_1746 [new locus tag: HKM25_RS08545 ]
• symbol: HKM25_1746
• product: istB-like ATP binding family protein
• replicon: chromosome
• strand: -
• coordinates: 1674365..1675261
• length: 897
• essential: unknown other strains

⊟Accession numbers

• Location: CP053210 (1674365..1675261) NCBI
• BioCyc:
• MicrobesOnline:
• PneumoBrowse for strain D39V: SPV_1521 PneumoBrowse

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  
  ATGGAAAGTGTCGGAGACGTACTCAAACGTCAACCCAGCCGTTTTTATTATCAAGATTTG
  GTCCAGAAAATCATGAAGGACCCTGATGTTGCGGCTTTTATCCAGCAAGAATCCTTGACT
  CCAGAGGAATTAAATCGCAGTATCTCCAAGTTTAATCAGTACATCACCGAGCGTGACAAG
  TTTCTCCGTGGGGATACGGATTATATTGCCAAAGGCTACAAGCCGATTTTGGTTAAGAAT
  CATGGCTATGCAGATGTTTCATATGAAGAAACTCCTGAGCTAATCGCGGCTGAAAAAGAA
  GCGGCTATTAAGAACCGTCTCAAGTTAATCAATCTACCAGCCAGTCTCAAGAAAGCTAGT
  TTGGCTCAAGTTGACTTGGATGATTTGGGGCGCTTACCAGTTTTTGAAAAGCTACTAGCC
  TTCGTGGAGCAATATCCAGCTATTCGAAAAGGTCTTTACTTATATGGAGACTTTGGTGTG
  GGTAAAAGTTTCATGGTGGCGGCCTTAGCTCATGATTTATCAGAAAAACGTGGTGTTTCA
  TCAACTCTCCTCCACTATCCTAGCTTTGTCATTGATGTCAAAAATGCTATCAGTGATGGC
  AATGTTAAGACCTTGGTGGATGAGATTAAGCTGTCTGAGGTCCTGATTTTAGATGATATT
  GGCGCCGAGCAATCAACCGTTTGGGTGCGTGACGAAATCCTGCAGGTCATTCTCCAATAT
  CGGATGCAGGAAAATTTACCGACCTTTTTCACATCCAACTTCAACTTTGAAGATTTGGAG
  AAGCATTTTGCGAAAGTGAAACATGGAAATGACGAAACCTGGGAAGCCAGACGGGTCATG
  GAACGCATCCGTTATTTGGCTGAGGAGACTCGTTTAGAAGGAGTAAACCGTCGATGA
  60
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  897
  

⊟Protein

⊟General

• locus tag: HKM25_1746 [new locus tag: HKM25_RS08545 ]
• symbol: HKM25_1746
• description: istB-like ATP binding family protein
• length: 298
• theoretical pI: 5.51546
• theoretical MW: 34259.9
• GRAVY: -0.360067

⊟Function

• TIGRFAM:
  Genetic information processing DNA metabolism DNA replication, recombination, and repair chromosomal replication initiator protein DnaA (TIGR00362; HMM-score: 28.3)
  and 1 more
  Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaA regulatory inactivator Hda (TIGR03420; HMM-score: 16.8)
• TheSEED: data available for D39, Hungary19A-6, TIGR4
• PFAM:
  no clan defined DnaI_N; Primosomal protein DnaI N-terminus (PF07319; HMM-score: 76.1)
  and 13 more
  P-loop_NTPase (CL0023) IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 35.2)
  Bac_DnaA; Bacterial dnaA protein (PF00308; HMM-score: 25.8)
  RNA_helicase; RNA helicase (PF00910; HMM-score: 23.4)
  AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 19.2)
  AAA_16; AAA ATPase domain (PF13191; HMM-score: 17.9)
  KAP_NTPase; KAP family P-loop domain (PF07693; HMM-score: 17.2)
  AFG1_ATPase; AFG1-like ATPase (PF03969; HMM-score: 16.6)
  TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 15.3)
  DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 14.5)
  AAA_22; AAA domain (PF13401; HMM-score: 13.3)
  Globin (CL0090) Bac_globin; Bacterial-like globin (PF01152; HMM-score: 13.1)
  P-loop_NTPase (CL0023) AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 12.7)
  no clan defined STI1; STI1 domain (PF17830; HMM-score: 12.1)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.938
  • Cytoplasmic Membrane Score: 0.0546
  • Cell wall & surface Score: 0.0018
  • Extracellular Score: 0.0056
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.002657
  • TAT(Tat/SPI): 0.000209
  • LIPO(Sec/SPII): 0.000396
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq: QJS37451 NCBI
• UniProt:

⊟Protein sequence

• MESVGDVLKRQPSRFYYQDLVQKIMKDPDVAAFIQQESLTPEELNRSISKFNQYITERDKFLRGDTDYIAKGYKPILVKNHGYADVSYEETPELIAAEKEAAIKNRLKLINLPASLKKASLAQVDLDDLGRLPVFEKLLAFVEQYPAIRKGLYLYGDFGVGKSFMVAALAHDLSEKRGVSSTLLHYPSFVIDVKNAISDGNVKTLVDEIKLSEVLILDDIGAEQSTVWVRDEILQVILQYRMQENLPTFFTSNFNFEDLEKHFAKVKHGNDETWEARRVMERIRYLAEETRLEGVNRR

⊟Experimental data

• protein localization:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Expression data

• PneumoExpress for strain D39V: SPV_1521 PneumoExpress

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications