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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 12-MAY-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 6A-10
  • locus tag: HKM25_1862 [new locus tag: HKM25_RS09120 ]
  • pan locus tag?: PNEUPAN003343000
  • symbol: HKM25_1862
  • pan gene symbol?: sfuB
  • synonym:
  • product: binding-protein-dependent transport system inner membrane component family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HKM25_1862 [new locus tag: HKM25_RS09120 ]
  • symbol: HKM25_1862
  • product: binding-protein-dependent transport system inner membrane component family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1797123..1798634
  • length: 1512
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP053210 (1797123..1798634) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1607 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGAACAGTTTTAAGTTAGCATTTTCACTCATTATTACAGTTAATGTCGTAGGTATTCTT
    TGTGTTCTATTTACAGAGTACTTTGATATTAAAGGTGCTAAAATTTTAAAATTAGGTTAT
    ATGACCTCTTTAATTTATGGAGGAGTGGTTTTAGCGACTGGATATAAATTTGTCTATGGT
    CCTTATGGATTGATTACAAAATTTTTACAAAATGTTATCCCTTCTTTAGACTCTAACTGG
    TTTATTGGGTATGGTGCAGTCTTATTCATTATGACATTTTCAGGAACTGCTAATCATACA
    TTGTTTTTAACAAATACAATTCGAAGCGTTGACTATCACACTATTGAGGCTGCTCGAAAT
    ATGGGAGCAAAACCATTTACTGTTTTCCGAAAAGTAGTGTTACCAACCTTAATTCCAACT
    CTATTTGCACTTACTATTATGGTTTTTCTTAGTGGTTTATCTGCAGTAGCAGCACCCATG
    ATTGTTGGTGGTAAAGAATTTCAAACTATAAATCCAATGATTATTACATTTGCAGGGATG
    GGGAATTCTCGTGATTTAGCTGCCTTACTTGCAATTATTTTAGGTATTGCAACTACAATT
    TTGCTTACTATCATGAATAAGATAGAAAAAGGTGGAAATTATATTTCTATCTCTAAGACT
    AAAGCGCCTCTTAAAAAACAAAAAATTGCGTCTAAGCCTTGGAATATCATTGCTCACATT
    GTAGCATATGGATTGTTCACAGTTTTCATGCTTCCACTAATTTTTATAGTATTATACTCA
    TTTACAGATCCAGTTGCAATTCAAACAGGTAACTTAACATTATCAAACTTTACTTTAGAA
    AATTATCGCTTATTCTTTAGTAATAGTGCGGCATTCTCTCCATTCTTGGTCAGCTTTATT
    TATTCTATTATTGCTGCGACAACAGCAACAATTCTCGCAGTTGTATTTGCTCGTGTTGTC
    AGAAAACATAAATCTTGTTTTGATTTCTTATTTGAATATGGTGCTCTACTTCCTTGGTTA
    CTACCAAGTACACTTTTAGCAGTAAGTTTATTATTTACTTTTAATCAGCCACAATTTCTT
    GTCTTGAATCAGATTTTGGTAGGTAGTTTGGTAATTCTACTTATTGCATATATAGTTGTA
    AAAATCCCATTTTCTTATAGAATGGTACGTGCTATTTTATTTAGTGTTGATGATGAGATG
    GAAGATGCAGCAAGAAGTATGGGTGCTTCACCTTTTTATACTATGATGAAGGTTATCATT
    CCATTTATTTTACCGGTTGTTCTCTCTGTTATTGCTTTAAACTTTAACTCTTTATTAACT
    GACTTCGACTTATCTGTATTCCTTTACCATCCCCTAGCTCAACCATTAGGTATTACGATT
    CGATCTGCAGGTGATGAAACAGCAACATCTAATGCACAAGCTCTGGTATTTGTTTATACA
    ATTGTTCTGATGATTATTTCTGGAACGGTATTATACTTCACACAAAGACCGGGGCGTAAA
    GTAAGGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1512

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HKM25_1862 [new locus tag: HKM25_RS09120 ]
  • symbol: HKM25_1862
  • description: binding-protein-dependent transport system inner membrane component family protein
  • length: 503
  • theoretical pI: 10.0577
  • theoretical MW: 55550
  • GRAVY: 0.814115

⊟Function[edit | edit source]

  • TIGRFAM:
    2-aminoethylphosphonate ABC transport system, membrane component PhnV (TIGR03255; HMM-score: 97.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 82.6)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 78.7)
    and 8 more
    NifC-like ABC-type porter (TIGR01581; HMM-score: 72.8)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 66.1)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein (TIGR00969; HMM-score: 49.9)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 47.3)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 25.1)
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 21.2)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysW (TIGR02140; HMM-score: 9)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 8.2)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 80.9)
    and 1 more
    TetR_C (CL0174) TetR_C_18; Tetracyclin repressor-like, C-terminal domain (PF17923; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 11
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 1
    • Cell wall & surface Score: 0
    • Extracellular Score: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.035223
    • TAT(Tat/SPI): 0.000365
    • LIPO(Sec/SPII): 0.044423
  • predicted transmembrane helices (TMHMM): 11

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: QJS37566 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNSFKLAFSLIITVNVVGILCVLFTEYFDIKGAKILKLGYMTSLIYGGVVLATGYKFVYGPYGLITKFLQNVIPSLDSNWFIGYGAVLFIMTFSGTANHTLFLTNTIRSVDYHTIEAARNMGAKPFTVFRKVVLPTLIPTLFALTIMVFLSGLSAVAAPMIVGGKEFQTINPMIITFAGMGNSRDLAALLAIILGIATTILLTIMNKIEKGGNYISISKTKAPLKKQKIASKPWNIIAHIVAYGLFTVFMLPLIFIVLYSFTDPVAIQTGNLTLSNFTLENYRLFFSNSAAFSPFLVSFIYSIIAATTATILAVVFARVVRKHKSCFDFLFEYGALLPWLLPSTLLAVSLLFTFNQPQFLVLNQILVGSLVILLIAYIVVKIPFSYRMVRAILFSVDDEMEDAARSMGASPFYTMMKVIIPFILPVVLSVIALNFNSLLTDFDLSVFLYHPLAQPLGITIRSAGDETATSNAQALVFVYTIVLMIISGTVLYFTQRPGRKVRK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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