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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 28-AUG-2013
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TCH8431/19A
- locus tag: HMPREF0837_10469 [new locus tag: HMPREF0837_RS02315 ]
- pan locus tag?: PNEUPAN000874000
- symbol: HMPREF0837_10469
- pan gene symbol?: nrdI
- synonym:
- product: putative nrdI protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HMPREF0837_10469 [new locus tag: HMPREF0837_RS02315 ]
- symbol: HMPREF0837_10469
- product: putative nrdI protein
- replicon: chromosome
- strand: +
- coordinates: 425556..426038
- length: 483
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: CP001993 (425556..426038) NCBI
- BioCyc: see HMPREF0837_RS02315
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0160 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
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421
481ATGGAGGTACATATGAAGACAATTTCTTTAGTTTATATTAGTTTGAGTGGCAACACTGAA
AGTTTTGTGACGCGCTTGAAAGACTATCTCTTGTCCCAGTACAAAGGGATTGAGGTTCAA
AAGATTCATATCAAGGATTTGGTCAAGGAAGGCAAAAATTTCTATGAAATGGACCATCCC
TATGTCGCTTTTTTGCCGACCTATCTCGAAGGTGGGAATGGCGTGGATAACGGAGATGTT
GAGATTTTGACGACACCGGTGGGAGATTTTATTGCCTATGGTAACAATGCTAGTAAGTGT
TTTGGTGTGGTTGGGTCAGGAAATCGTAACTTTAATAACCAATACTGCCTAACAGCCAAG
CAATACAGTCAACGCTTTGGCTTCCCTGTATTGGCTGACTTTGAAATGCGAGGCATGCTG
GAAGATATCAAACATGTCGCAGCTATTATCGCAGATTTGTATGAGTTGGAAAAGGAGAAT
TAA60
120
180
240
300
360
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480
483
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF0837_10469 [new locus tag: HMPREF0837_RS02315 ]
- symbol: HMPREF0837_10469
- description: putative nrdI protein
- length: 160
- theoretical pI: 4.98226
- theoretical MW: 18065.4
- GRAVY: -0.20375
⊟Function[edit | edit source]
- TIGRFAM: Purines, pyrimidines, nucleosides, and nucleotides 2'-Deoxyribonucleotide metabolism nrdI protein (TIGR00333; HMM-score: 62.9)and 2 moreEnergy metabolism Electron transport flavodoxin (TIGR01753; HMM-score: 25.4)putative ribonucleotide reductase-associated flavodoxin (TIGR01754; HMM-score: 21)
- TheSEED :
- Ribonucleotide reduction protein NrdI
- PFAM: Flavoprotein (CL0042) Flavodoxin_NdrI; NrdI Flavodoxin like (PF07972; HMM-score: 135.5)and 1 moreFlavodoxin_1; Flavodoxin (PF00258; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9772
- Cytoplasmic Membrane Score: 0.0018
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.021
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.017097
- TAT(Tat/SPI): 0.000301
- LIPO(Sec/SPII): 0.028137
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ADI68697 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MEVHMKTISLVYISLSGNTESFVTRLKDYLLSQYKGIEVQKIHIKDLVKEGKNFYEMDHPYVAFLPTYLEGGNGVDNGDVEILTTPVGDFIAYGNNASKCFGVVGSGNRNFNNQYCLTAKQYSQRFGFPVLADFEMRGMLEDIKHVAAIIADLYELEKEN
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0160 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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