From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 28-AUG-2013

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TCH8431/19A
  • locus tag: HMPREF0837_11013 [new locus tag: HMPREF0837_RS04880 ]
  • pan locus tag?: PNEUPAN001651000
  • symbol: HMPREF0837_11013
  • pan gene symbol?: ctpA
  • synonym:
  • product: copper-exporting ATPase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HMPREF0837_11013 [new locus tag: HMPREF0837_RS04880 ]
  • symbol: HMPREF0837_11013
  • product: copper-exporting ATPase
  • replicon: chromosome
  • strand: +
  • coordinates: 933434..935686
  • length: 2253
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    GTGGAGACTATGACAGAAATTGTGAAAGCAAGCTTAGAAAATGGCATTCAAAAAATCCGT
    ATCCGAGCTGAAAAAGGCTATCATCCAGCCCATATCCAGCTTCAAAAGGGAATTCCAGCT
    GAGATTACCTTTCATCGTGCTACTCCTTCAAACTGTTATAAGGAAATTCTGTTTGAAGAA
    GAAGGTATCTTGGAACCAATCGGCGTAGATGAGGAGAAAGTCATTCGTTTTACGCCTCAA
    GAATTAGGGCGACATGAATTTTCTTGTGGCATGAAGATGCAAAAGGGAAGCTATACAGTC
    GTTGAGAAGACTCGAAAATCTCTATCTCTCCTGCAACGTTTTTGGATTACTAGTATCTTT
    ACTGTGCCTCTTGTGATTCTCATGATTGGGATGTTGACAGGTAGCATTAGTCATCAAGTC
    ATGCATTGGGGAACCTTTTTAGCAACAACGCCTATTATGTTAGTTGCAGGTAAGCCATAT
    ATCCAGAGTGCTTGGGCCAGTTTTAAAAAGCACAATGCCAACATGGATACCTTGGTTGCG
    CTGGGAACTCTAGTGGCTTATTTCTATAGCCTAGTTGCTCTCTTTGCTGGTCTCCCTGTT
    TACTTCGAAAGTGCTGGATTTATCCTCTTTTTCGTTCTTTTGGGAGCAGTTTTTGAGGAA
    AAAATGAGAAAAAATACGTCCCAAGCTGTGGAGAAATTACTGGACTTGCAAGCTAAAACC
    GCAGAAGTCTTGAGTGATGATAGTTATGTCCAAGTTCCTTTGGAACAAGTCAAGGTAGGC
    GACCTGATTCGAGTGCGTCCCGGTGAAAAGATTGCTGTTGATGGTGTCGTAGTAGAAGGT
    GTCTCTAGTATTGACGAATCCATGGTGACAGGTGAGAGTCTGCCTGTGGACAAGACAGTT
    GGAGATACTGTCATTGGCTCAACCATCAATCATAGTGGAACGCTTGTCTTTAGAGCAGAA
    AAAGTTGGCTCAGAGACTGTTTTGGCTCAGATTGTGGATTTTGTGAAGAAAGCTCAGACA
    AGTCGTGCGCCGATTCAGGACTTGACGGATAAGATTTCAGGGATTTTTGTCCCAGTAGTT
    GTCATTTTAGGAATCATGACCTTTTGGGTTTGGTTCGTCTTGCTCAGGGATAGTGTGGTT
    GTGCTTGGAGCTAGCTTTGTGTCCTCTCTTCTCTACGGAGTGGCGGTTTTGATTATCGCC
    TGTCCTTGTGCCTTGGGACTTGCAACACCGACAGCCCTTATGGTGGGGACAGGACGTAGT
    GCCAAGATGGGGGTTCTCCTCAAAAATGGAACTGTCTTACAGGAAATCCAGAAAGTTCAA
    ACTCTTGTCTTTGATAAGACCGGGACTTTGACGGAAGGGAAACCTGTGGTAACAGATGTC
    ATCGGCGACGAAGTAGAAGTGTTTGGGTTGGCAGCCTCCTTGGAAGATGCTTCTCAACAC
    CCACTGGCTGAGGCTATCGTTAAGCGAGCGAGTGAAGCTGGACTTGAGTTTCAAACTGTT
    GAAAATTTTCAGACCTTGCACGGGAAAGGTGTTTCAGGGCGAATCAATGGAAAACAAGTT
    TTACTTGGAAATGCTAAAATGCTGGATGGCATGGATATTTCTAATACTTATCAAGATAAA
    CTAGAAGAACTAGAAAAAGAAGCTAAGACAGTTGTGTTCTTAGCTGTTGACAATGAAATC
    AAAGGCTTGCTTGCTTTGCAAGATATTCCTAAGGAAAATGCTAAGCTAGTCATCAGTCAG
    CTAAAAAAACGTGGTCTCCGAACAGTCATGCTGACAGGAGACAATGCTGGTGTGGCGCGT
    GCTATTGCAGATCAAATCGGAATTGAAGAGGTCATTGCAGGCGTCTTGCCAGAAGAAAAA
    GCCCATGAAATCCATAAACTGCAACAGTCAGGGAAAGTAGCCTTTGTTGGGGACGGTATC
    AATGACGCTCCTGCCCTTAGTGTAGCAGATGTGGGGATTGCTATGGGAGCTGGAACAGAT
    ATCGCCATCGAATCAGCAGATTTGGTGTTGACAACCAATAATCTTTTAGGAGTGGTTCGT
    GCCTTTGATATGAGTAAGAAAACCTTTCATCGAATTCTACTCAATCTTTTCTGGGCTTTT
    ATCTACAATGTTGTTGGAATTCCGATTGCAGCAGGAGTCTTTTCAGGTGTTGGACTGGCT
    CTCAACCCAGAATTGGCAGGTCTAGCCATGGCCTTTAGTTCTGTATCTGTTCTGACCAGT
    TCCCTTCTGTTAAATTTTAGTAAAATAGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2253

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HMPREF0837_11013 [new locus tag: HMPREF0837_RS04880 ]
  • symbol: HMPREF0837_11013
  • description: copper-exporting ATPase
  • length: 750
  • theoretical pI: 5.68933
  • theoretical MW: 80972.8
  • GRAVY: 0.321733

⊟Function[edit | edit source]

  • reaction:
    EC 3.6.3.4?  ExPASy
    Cu2+-exporting ATPase ATP + H2O + Cu2+(Side 1) = ADP + phosphate + Cu2+(Side 2)
  • TIGRFAM:
    heavy metal translocating P-type ATPase (TIGR01525; EC 3.6.3.-; HMM-score: 641.6)
    Cellular processes Cellular processes Detoxification copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 627.4)
    Metabolism Transport and binding proteins Cations and iron carrying compounds copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 627.4)
    and 21 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds cadmium-translocating P-type ATPase (TIGR01512; EC 3.6.3.3; HMM-score: 392.5)
    HAD ATPase, P-type, family IC (TIGR01494; EC 3.6.3.-; HMM-score: 317.5)
    plasma-membrane proton-efflux P-type ATPase (TIGR01647; EC 3.6.3.6; HMM-score: 184.2)
    Metabolism Transport and binding proteins Cations and iron carrying compounds K+-transporting ATPase, B subunit (TIGR01497; EC 3.6.3.12; HMM-score: 181.7)
    calcium-translocating P-type ATPase, PMCA-type (TIGR01517; EC 3.6.3.8; HMM-score: 134.3)
    Metabolism Transport and binding proteins Cations and iron carrying compounds calcium-translocating P-type ATPase, SERCA-type (TIGR01116; EC 3.6.3.8; HMM-score: 126.5)
    calcium-transporting P-type ATPase, PMR1-type (TIGR01522; EC 3.6.3.8; HMM-score: 115.3)
    Metabolism Transport and binding proteins Cations and iron carrying compounds magnesium-translocating P-type ATPase (TIGR01524; EC 3.6.3.2; HMM-score: 104.2)
    Metabolism Energy metabolism ATP-proton motive force interconversion Na,H/K antiporter P-type ATPase, alpha subunit (TIGR01106; EC 3.6.3.-; HMM-score: 95.1)
    P-type ATPase of unknown pump specificity (type V) (TIGR01657; HMM-score: 91.4)
    potassium/sodium efflux P-type ATPase, fungal-type (TIGR01523; EC 3.6.3.-; HMM-score: 86.2)
    Unknown function Enzymes of unknown specificity Cof-like hydrolase (TIGR00099; HMM-score: 34.4)
    phosphoglycolate phosphatase, TA0175-type (TIGR01487; EC 3.1.3.18; HMM-score: 26)
    Metabolism Amino acid biosynthesis Serine family phosphoserine phosphatase SerB (TIGR00338; EC 3.1.3.3; HMM-score: 24.7)
    Unknown function Enzymes of unknown specificity HAD phosphoserine phosphatase-like hydrolase, family IB (TIGR01488; HMM-score: 24.2)
    phosphoserine phosphatase-like hydrolase, archaeal (TIGR01491; HMM-score: 20.1)
    sucrose-phosphate phosphatase subfamily (TIGR01482; EC 3.1.3.-; HMM-score: 16)
    Unknown function Enzymes of unknown specificity HAD hydrolase, family IIB (TIGR01484; HMM-score: 14)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (TIGR01670; EC 3.1.3.45; HMM-score: 13.6)
    AHBA synthesis associated protein (TIGR01454; HMM-score: 13.2)
    phospholipid-translocating P-type ATPase, flippase (TIGR01652; EC 3.6.3.1; HMM-score: 8.3)
  • TheSEED  :
    • Cu+ P-type ATPase
    Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Copper homeostasis  Copper-translocating P-type ATPase (EC 3.6.3.4)
  • PFAM:
    no clan defined E1-E2_ATPase; E1-E2 ATPase (PF00122; HMM-score: 183.9)
    HAD (CL0137) Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 161.3)
    and 3 more
    CU_oxidase (CL0026) Cupredoxin_1; Cupredoxin-like domain (PF13473; HMM-score: 39.1)
    HAD (CL0137) Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 35.8)
    HAD; haloacid dehalogenase-like hydrolase (PF12710; HMM-score: 21.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9993
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0006
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006401
    • TAT(Tat/SPI): 0.000375
    • LIPO(Sec/SPII): 0.000981
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADI69241 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • METMTEIVKASLENGIQKIRIRAEKGYHPAHIQLQKGIPAEITFHRATPSNCYKEILFEEEGILEPIGVDEEKVIRFTPQELGRHEFSCGMKMQKGSYTVVEKTRKSLSLLQRFWITSIFTVPLVILMIGMLTGSISHQVMHWGTFLATTPIMLVAGKPYIQSAWASFKKHNANMDTLVALGTLVAYFYSLVALFAGLPVYFESAGFILFFVLLGAVFEEKMRKNTSQAVEKLLDLQAKTAEVLSDDSYVQVPLEQVKVGDLIRVRPGEKIAVDGVVVEGVSSIDESMVTGESLPVDKTVGDTVIGSTINHSGTLVFRAEKVGSETVLAQIVDFVKKAQTSRAPIQDLTDKISGIFVPVVVILGIMTFWVWFVLLRDSVVVLGASFVSSLLYGVAVLIIACPCALGLATPTALMVGTGRSAKMGVLLKNGTVLQEIQKVQTLVFDKTGTLTEGKPVVTDVIGDEVEVFGLAASLEDASQHPLAEAIVKRASEAGLEFQTVENFQTLHGKGVSGRINGKQVLLGNAKMLDGMDISNTYQDKLEELEKEAKTVVFLAVDNEIKGLLALQDIPKENAKLVISQLKKRGLRTVMLTGDNAGVARAIADQIGIEEVIAGVLPEEKAHEIHKLQQSGKVAFVGDGINDAPALSVADVGIAMGAGTDIAIESADLVLTTNNLLGVVRAFDMSKKTFHRILLNLFWAFIYNVVGIPIAAGVFSGVGLALNPELAGLAMAFSSVSVLTSSLLLNFSKID

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=HMPREF0837_11013&oldid=170230"