⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TCH8431/19A
- locus tag: HMPREF0837_RS03665
- pan locus tag?: PNEUPAN001318000
- symbol: rlrA
- pan gene symbol?: rlrA
- synonym:
- product: PI-1 pilus transcriptional regulator RlrA
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS, pseudogene
- locus tag: HMPREF0837_RS03665
- symbol: rlrA
- product: PI-1 pilus transcriptional regulator RlrA
- replicon: chromosome
- strand: -
- coordinates: 686805..688333
- length: 1529
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
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541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501ATGCTAAACAAATACATTGAAAAAAGAATTACAGATAAAATTACCATTTTAAATATATTA
TTGGATATTCGGTCTATTGAACTAGATGAACTGTCTACTTTAACTTCATTACAATCTAAA
AGTCTCCTAAGCATTTTGCAGGAATTACAAGAAACATTCGAGGAAGAGTTGACATTTAAT
TTAGATACGCAACAAGTTCAATTAATCGAACACCATTCTCATCAAACGAATTATTACTTC
CATCAGCTTTATAACCAATCAACTATTTTAAAAATACTCCGCTTCTTTCTACTACAAGGT
AATCAAAGCTTTAACGAATTTACACAAAAAGAGTATATTTCCATCGCAACAGGCTACCGC
GTACGACAAAAGTGTGGCTTGTTACTACGTTCAGTAGGTTTGGACCTTGTGAAAAATCAA
GTAGTTGGTCCTGAATATCGCATTCGTTTTTTAATTGCACTCCTCCAGTTTCATTTTGGT
ATTGAGATTTATGATTTGAATGATGGAAGTATGGATTGGGTCACACATATGATTGTGCAG
TCTAATTCTCAACTCAGTCATGAACTGTTAGAAATCACACCTGACGAGTATGTTCATTTT
AGCATACTAGTGGCACTCACTTGGAAACGTCGGGAATTTCCACTTGAGTTCCCTGAGTCC
AAAGAGTTTGAAAAATTAAAAAACCTCTTTATGTATCCGATTTTGATGGAACATTGCCAA
ACTTACTTAGAGCCACATGCCAACATGACTTTTACTCAGGAAGAACTGGATTATATCTTT
TTGGTTTATTGTTCTGCTAATTCTTCGTTTTCCAAGGACAAATGGAATCAAGAAAAAAGA
CTCATACTATTCAACTGATTCTTCAGCATACAAGAGGAAAGCATCTACTATCCAAGTTCA
AGAATATCTTAGGAAATGACATTTCGAATTCTCTTTCTTTTTTAACAGCACTGACTTTCT
TAACAAGAACGTTTTTGTTTGGTTTACAAAATCTAGTTCCCTATTATAATTATTACGAAC
ATTATGGGATTGAAAGCGACAAGCCACTGTATCATATTTCGAAAGCAATTGTTCAAGAGT
GGATGACTGAGCAGAAGATTGAAGGAGTTATCGACCAGCATCGGCTGTACCTTTTCTCAC
TCTACTTGACAGAAACCATCTTTTCCTCACTACCTGCTATCCCGATTTTTATCATTTTAA
ATAATCAAGCAGATGTAAACTTAATAAAGTCCATTATTTTACGGAATTTTACTGACAAAG
TTGCCTCTGTTACAGGATACAATATTCTAATTAGTCCTCCTCCTTCAGAGGAGCATTTGA
CAGAGCCATTGATTATTATTACAACGAAAGAATACCTGCCTTACGTTAAAAAGCAGTATC
CCAAAGGGAAACATCACTTTTTGACGATTGCCTTAGATTTGCATGTTAGCCAACAGCGTC
TCATCTATCAGACAATTGTAGATATCCGAAAAGAGGCTTTTGACAAACGGGTCGCAATGA
TTGCTAAAAAGGCTCACTATTTGTTATAA60
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1140
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1529
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF0837_RS03665
- symbol: RlrA
- description: PI-1 pilus transcriptional regulator RlrA
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for Hungary19A-6, TIGR4
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- DeepLocPro:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
David L Hava, Carolyn J Hemsley, Andrew Camilli
Transcriptional regulation in the Streptococcus pneumoniae rlrA pathogenicity islet by RlrA.
J Bacteriol: 2003, 185(2);413-21
[PubMed:12511486] [WorldCat.org] [DOI] (P p)Julianna LeMieux, David L Hava, Alan Basset, Andrew Camilli
RrgA and RrgB are components of a multisubunit pilus encoded by the Streptococcus pneumoniae rlrA pathogenicity islet.
Infect Immun: 2006, 74(4);2453-6
[PubMed:16552078] [WorldCat.org] [DOI] (P p)Jason W Rosch, Beth Mann, Justin Thornton, Jack Sublett, Elaine Tuomanen
Convergence of regulatory networks on the pilus locus of Streptococcus pneumoniae.
Infect Immun: 2008, 76(7);3187-96
[PubMed:18443093] [WorldCat.org] [DOI] (I p)Bernd Kreikemeyer, Gustavo Gámez, Immaculada Margarit, Jean-Christophe Giard, Sven Hammerschmidt, Axel Hartke, Andreas Podbielski
Genomic organization, structure, regulation and pathogenic role of pilus constituents in major pathogenic Streptococci and Enterococci.
Int J Med Microbiol: 2011, 301(3);240-51
[PubMed:21112248] [WorldCat.org] [DOI] (I p)