From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-AUG-2013

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae gamPNI0373
  • locus tag: HMPREF1038_01108 [new locus tag: HMPREF1038_RS05465 ]
  • pan locus tag?: PNEUPAN002210000
  • symbol: dnaG
  • pan gene symbol?: dnaG
  • synonym:
  • product: DNA primase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HMPREF1038_01108 [new locus tag: HMPREF1038_RS05465 ]
  • symbol: dnaG
  • product: DNA primase
  • replicon: chromosome
  • strand: -
  • coordinates: 1025267..1027138
  • length: 1872
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    TTGAATAAAGTAGGGAAAATGAGTGAAATAGTTTACTTTTTTTCTGAAATAAAGTATACT
    ATATATAGTATACTATATAAAGTATACTATGATAACATGGAGGTATTGTGTATGGTTGAC
    AAACAAGTCATTGAAGAAATCAAAAACAATGCCAACATTGTGGAAGTCATAGGAGATGTG
    ATTTCTTTACAAAAGGCAGGACGGAACTATCTAGGGCTCTGTCCTTTTCATGGCGAAAAA
    ACACCATCTTTCAACGTTGTAGAGGATAAGCAGTTTTATCACTGTTTCGGTTGTGGTCGC
    TCAGGTGATGTCTTTAAGTTCATCGAGGAGTACCAAGGGGTTCCCTTTATAGAGGCAGTC
    CAAATCTTAGGTCAGCGTGTTGGAATTGAGGTTGAAAAACCGCTTTATAGTGAGCAGAAG
    TCAGCCTCACCTCACCAAGCTCTTTATGATATGCACGAAGATGCAGCCAAATTTTACCAT
    GCTATTCTCATGACAACGACTATGGGAGAAGAGGCCAGAAATTACCTTTATCAGCGGGGT
    TTGACAGATGAAGTGCTTAAACATTTTTGGATTGGTTTAGCACCTCCAGAACGAAACTAT
    CTCTATCAACGTTTGTCTGATCAGTATCGTGAAGAGGATTTACTGGATTCAGGCCTGTTT
    TATCTCTCGGATGCCAATCAATTTGTAGACACCTTTCACAATCGCATTATGTTTCCCCTG
    ACAAATGACCAAGGAAAGATCATTGCCTTCTCAGGTCGTATCTGGCAAAAAACGGATTCA
    CAAACTTCTAAGTATAAAAACAGCCGATCGACTGCAATTTTTAACAAAAGTTACGAATTA
    TATCATATGGATAGGGCAAAAAAATCTTCTGGAAAAGCTAGTGAGATTTACCTGATGGAA
    GGATTCATGGATGTTATTGCAGCCTATCGGGTTGGAATCGAAAATGCTGTGGCGTCGATG
    GGAACGGCCTTGAGTCGAGAGCATGTTGAGCATCTGAAAAGGTTAACCAAGAAATTGGTT
    CTTGTTTACGATGGAGATAAGGCTGGGCAAGCCGCGATATTGAAAGCATTGGATGAAATT
    GGTGATATGCCTGTGCAAATCGTCAGCATGCCTGATAACTTGGATCCTGATGAGTATCTA
    CAAAAAAATGGTCCAGAAGACTTGGCCTATCTATTAACGAAAACTCGTATTAGTCCGATT
    GAGTTCTACATTCATCAGTACAAACCTGAAAACAGTGAAAATCTGCAGGCTCAGATTGAG
    TTTATTGAAAAAATAGCTCCCTTGATTGTTAAAGAAAAGTCCATCGCTGCTCAAAACAGC
    TATATTCATATTTTAGCTGACAGTCTGGCGTCCTTTGATTATGCCCAGATTGAGCAGATT
    GTTAATGAGAGTCGTCAGGTGCAAAGGCAGAATCGCATGGAAAGAATTTCCAGACCGACG
    CCAATCACCATGCCTGTCACCAAGCAGTTATCGGCTATTATGAGGGCAGAAGCCCATCTA
    CTCTATCGGATGATGGAATCCCCTCTTGTTTTGAACGATTACCGTTTGCGAGAAGACTTT
    GCATTTGCTACACCTGAATTTCAGGTCTTATATGACTTGCTTGGCCAGTATGGAAATCTT
    CCTCCAGAAGTTTTAGCAGAGCAGACAGAGGAAGTTGAAAGAGCTTGGTACCAAGTTTTA
    GCTCAGGATTTGCCTGCTGAGATATCGCCGCAGGAACTTAGTGAAGTAGAGATGACTCGA
    AACAAGGCTCTCTTGAATCAGGACAATATGAGAATCAAAAAGAAGGTGCAGGAAGCTAGC
    CATGTAGGAGATACAGATACAGCCCTAGAAGAATTGGAACGTTTAATTTCCCAAAAGAGA
    AGAATGGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1872

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HMPREF1038_01108 [new locus tag: HMPREF1038_RS05465 ]
  • symbol: DnaG
  • description: DNA primase
  • length: 623
  • theoretical pI: 5.08154
  • theoretical MW: 71859.4
  • GRAVY: -0.402568

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA primase (TIGR01391; EC 2.7.7.-; HMM-score: 453.7)
    and 1 more
    Unknown function General DNA primase-like protein (TIGR00646; HMM-score: 26.1)
  • TheSEED  :
    • DNA primase (EC 2.7.7.-)
    DNA Metabolism DNA replication DNA-replication  DNA primase (EC 2.7.7.-)
  • PFAM:
    Zn_Beta_Ribbon (CL0167) zf-CHC2; CHC2 zinc finger (PF01807; HMM-score: 124.7)
    no clan defined Toprim_N; DNA primase catalytic core, N-terminal domain (PF08275; HMM-score: 119.9)
    and 4 more
    Toprim-like (CL0413) Toprim_4; Toprim domain (PF13662; HMM-score: 64)
    Toprim_2; Toprim-like (PF13155; HMM-score: 60.1)
    Toprim_3; Toprim domain (PF13362; HMM-score: 27.3)
    Toprim; Toprim domain (PF01751; HMM-score: 24.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9909
    • Cytoplasmic Membrane Score: 0.0059
    • Cell wall & surface Score: 0.0006
    • Extracellular Score: 0.0027
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00645
    • TAT(Tat/SPI): 0.000098
    • LIPO(Sec/SPII): 0.000571
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AFS43158 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNKVGKMSEIVYFFSEIKYTIYSILYKVYYDNMEVLCMVDKQVIEEIKNNANIVEVIGDVISLQKAGRNYLGLCPFHGEKTPSFNVVEDKQFYHCFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHEDAAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYREEDLLDSGLFYLSDANQFVDTFHNRIMFPLTNDQGKIIAFSGRIWQKTDSQTSKYKNSRSTAIFNKSYELYHMDRAKKSSGKASEIYLMEGFMDVIAAYRVGIENAVASMGTALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALDEIGDMPVQIVSMPDNLDPDEYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVKEKSIAAQNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMERISRPTPITMPVTKQLSAIMRAEAHLLYRMMESPLVLNDYRLREDFAFATPEFQVLYDLLGQYGNLPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSEVEMTRNKALLNQDNMRIKKKVQEASHVGDTDTALEELERLISQKRRME

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=HMPREF1038_01108&oldid=78397"