From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 22-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae gamPNI0373
  • locus tag: HMPREF1038_RS06685 [old locus tag: HMPREF1038_01368 ]
  • pan locus tag?: PNEUPAN002656000
  • symbol: HMPREF1038_RS06685
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HMPREF1038_RS06685 [old locus tag: HMPREF1038_01368 ]
  • symbol: HMPREF1038_RS06685
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1263385..1265019
  • length: 1635
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_018630 (1263385..1265019) NCBI
  • BioCyc: HMPREF1038_RS06685 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1213 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGCGTCTCAAGGTCATTAAAAAATTAGTTGATATCAATATCCTCTATTCATCTCAAGAA
    GCTAATCTGGCTAATCTACGAAAGAAGCAGGCTAAGAATCCTGGGAAAAAAGTAAATGTT
    TCCGCTAGAGTCCTAAGTTCTTACATTTTTTCTAGTCTCTTGATGCTTTTCATGTCTATA
    AATATAGCCTTTCGTTTTCCTTTTGAGGAAATGCCAAGTTTTTTTAGTACGATGGTTGCT
    ATTTTACTGGTGCTGGCCTTTTCAACTTCTTTCACTGCATTTTACAATGTCTTTTATGAG
    AGTAAGGACCTGGCCTCCTATAGGCCCTATGCCTTTAAAGAATCAGAGATTATAATGGCC
    AAAGGTCTGTCTGTCCTCTTGCCAGCTCTAACTGGAATTGTACCAATCCTAGCTTATTTT
    CTAGCCCTCTATATTAGTCTAGCTCCTTCTCTTTGGCTGGGTTTGCCTTTGATGCTACTG
    TCCTTGACCTTATTATTTGTCTCTGTTACTTTAGTGACGGTAGTGGCAGTACATTTCTTG
    GCTCAGACTAGGGTCTTCAGAAAGTATCAGTCTATTTTTTCGAATGTGATGATTGGGATA
    GGAGTTCTCATACCTTTAATATTTATCTTCTTTCTTCAGTCGACTTTTGGAAGTATTGTT
    GACAAAGTTAGAGACATTCCATTTCTTCTTTATCCTCTTCATATCTTTTACAAAATAGCA
    GTGGAGCCTTTTTCGACAGAAGCCTTAGTGGGTCTGCTCGCTTGGATAGGACTAACTCTC
    TTCCTGCTTTATCTGACCAAAAAGAAGGTCCTTCCTCGTTTTTATGACGTGATCCTGCTT
    AATAGTGAGGAGAAGGTCAAAAAAGAACGTCGCAGCAAGGAGAGAATTTCAACCACTAAA
    AAGGGATTTTTCCGCATGGTTTTACGCTACCACCTCACCCTCTTGGGACAGGGTACTGGC
    GTGGTTACAGTGCTTTTTACAAGTGCTTTCCTTCCTTATCTCATGATGATCGGTCTGATT
    TCCAAAATCCGAGATTCTCAGATAGTTCCAGACATTCATCCTCCATACTGGTTACCCTTG
    TTTTTTGTAGGAGTGTTTATAGCAGTTGTCAATAACAATATCACCAGCCTGCCTTCAATT
    GCCTTGTCCTTGGAGAGGGAAAATGTTGATTTTCTTAAGAGTTTACCCTTTGACTTTGCT
    CGTTATGTGAAAGTGAAATTTTGGATTATATATGCTGTTCAGTCCTTTTTACCAATTCTG
    ACTTTGCTCGGTCTTTCTCTATATCTAGGCTTGTCCATCCTTTCGATGATTTACCTTATT
    GTGGCATGGATCCTTGCCAGTGTTATCCTTTCTTGCCACCATTACTTTAAGGACGTTAAA
    AATCTGTCAACCAATTGGAGTAGCATTACGGACCTGGTGAATCGTTCAAATGGCATAGTC
    GCCATAGTTTTATTGTTTATTTATAGTGCAATCCTGATGGCCCTTGTAATTGGGAGTATA
    TTCTTGGTTCAGTCTCTCTCCCCTATCCTTGCCATCAACTTGGGAGTAGGAGCTCTTATC
    GTCTTGCTTGCTCTTGCTATTTTTGGCTATCATTATTACCTGTCACGCATATTGGCAGAA
    ATAGAAAAAAGATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1635

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HMPREF1038_RS06685 [old locus tag: HMPREF1038_01368 ]
  • symbol: HMPREF1038_RS06685
  • description: hypothetical protein
  • length: 544
  • theoretical pI: 10.2383
  • theoretical MW: 61508.5
  • GRAVY: 0.828125

⊟Function[edit | edit source]

  • TIGRFAM:
    CcmD family protein (TIGR04391; HMM-score: 12.7)
  • TheSEED: see HMPREF1038_01368
  • PFAM:
    no clan defined COX14; Cytochrome oxidase c assembly (PF14880; HMM-score: 9.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9906
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0092
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007396
    • TAT(Tat/SPI): 0.000131
    • LIPO(Sec/SPII): 0.010004
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001844511 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRLKVIKKLVDINILYSSQEANLANLRKKQAKNPGKKVNVSARVLSSYIFSSLLMLFMSINIAFRFPFEEMPSFFSTMVAILLVLAFSTSFTAFYNVFYESKDLASYRPYAFKESEIIMAKGLSVLLPALTGIVPILAYFLALYISLAPSLWLGLPLMLLSLTLLFVSVTLVTVVAVHFLAQTRVFRKYQSIFSNVMIGIGVLIPLIFIFFLQSTFGSIVDKVRDIPFLLYPLHIFYKIAVEPFSTEALVGLLAWIGLTLFLLYLTKKKVLPRFYDVILLNSEEKVKKERRSKERISTTKKGFFRMVLRYHLTLLGQGTGVVTVLFTSAFLPYLMMIGLISKIRDSQIVPDIHPPYWLPLFFVGVFIAVVNNNITSLPSIALSLERENVDFLKSLPFDFARYVKVKFWIIYAVQSFLPILTLLGLSLYLGLSILSMIYLIVAWILASVILSCHHYFKDVKNLSTNWSSITDLVNRSNGIVAIVLLFIYSAILMALVIGSIFLVQSLSPILAINLGVGALIVLLALAIFGYHYYLSRILAEIEKR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=HMPREF1038_RS06685&oldid=76457"