From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 15-OCT-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae gamPNI0373
  • locus tag: HMPREF1038_RS10060 [old locus tag: HMPREF1038_02050 ]
  • pan locus tag?: PNEUPAN003812000
  • symbol: HMPREF1038_RS10060
  • pan gene symbol?: comGA
  • synonym:
  • product: GspE/PulE family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HMPREF1038_RS10060 [old locus tag: HMPREF1038_02050 ]
  • symbol: HMPREF1038_RS10060
  • product: GspE/PulE family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1863568..1864509
  • length: 942
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_018630 (1863568..1864509) NCBI
  • BioCyc: HMPREF1038_RS10060 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1863 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGGTTCAAGAAATTGCACAAGAAATCATTCGTTCAGCTCGGAAAAAAGGGACGCAGGAT
    ATTTATTTTGTCCCTAAGTTAGACGCCTATGAGCTTCATATGAGGGTAGGAGACGAGCGC
    TGTAAAATTGGTAGCTATGATTTTGAAAAGTTTGCAGCCGTTATCAGTCACTTTAAGTTT
    GTGGCGGGTATGAATGTGGGAGAAAAAAGACGTAGTCAACTGGGTTCCTGTGATTATGCC
    TATGACCAGAAGATGGCGTCTCTACGTTTATCTACTGTAGGCGATTATCGGGGACATGAG
    AGTTTGGTTATCCGTTTGTTGCACGATGAGGAGCAGGACTTGCATTTTTGGTTTCAGGAT
    ATTGAAGAATTAGGCAAGCAGTACAGGCAACGGGGACTCTATCTTTTTGCTGGCCCGGTT
    GGGAGTGGTAAGACGACCTTGATGCATGAATTGTCCAAGTCACTCTTTAAAGGACAGCAA
    GTTATGTCCATCGAAGATCCTGTCGAAATCAAGCAGGACGACATGCTTCAGTTGCAGTTG
    AACGAAGCAATCGGCCTAACCTATGAAAATCTAATCAAACTTTCCTTGCGTCATCGACCA
    GATCTCTTGATTATCGGAGAAACTCGTGACAGCGAGACGGCGCGTGCAGTGGTCAGAGCT
    AGTTTGACAGGTGCGACAGTCTTTTCAACCATTCACGCCAAGAGTATCCGAGGTGTTTAT
    GAGCGTCTGCTGGAGTTGGGTGTGAGTGAAGAAGAATTGGCAGTTGTTCTGCAAGGAGTC
    TGCTACCAGAGATTAATCGGGGGAGGAGGAATCGTTGACTTTGCAAACAGAGATTATCAA
    GAACACCAAGCAGCCAAGTGGAATGAGCAAATTGACCAGCTTCTTAAAGATGGACATATC
    ACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    942

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HMPREF1038_RS10060 [old locus tag: HMPREF1038_02050 ]
  • symbol: HMPREF1038_RS10060
  • description: GspE/PulE family protein
  • length: 313
  • theoretical pI: 6.01371
  • theoretical MW: 35579.2
  • GRAVY: -0.348882

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Pathogenesis type II secretion system protein E (TIGR02533; HMM-score: 142)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type II secretion system protein E (TIGR02533; HMM-score: 142)
    Cell structure Cell envelope Surface structures type IV-A pilus assembly ATPase PilB (TIGR02538; HMM-score: 120.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type IV-A pilus assembly ATPase PilB (TIGR02538; HMM-score: 120.4)
    and 21 more
    Cell structure Cell envelope Surface structures twitching motility protein (TIGR01420; HMM-score: 89.7)
    Cellular processes Cellular processes Chemotaxis and motility twitching motility protein (TIGR01420; HMM-score: 89.7)
    Genetic information processing Mobile and extrachromosomal element functions Plasmid functions plasmid transfer ATPase TraJ (TIGR02525; HMM-score: 60.3)
    P-type DNA transfer ATPase VirB11 (TIGR02788; HMM-score: 53)
    helicase/secretion neighborhood ATPase (TIGR03819; HMM-score: 50)
    Cellular processes Cellular processes Conjugation P-type conjugative transfer ATPase TrbB (TIGR02782; HMM-score: 48.6)
    Dot/Icm secretion system ATPase DotB (TIGR02524; HMM-score: 46.3)
    Cellular processes Cellular processes Sporulation and germination stage III sporulation protein AA (TIGR02858; HMM-score: 24.6)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking putative secretion ATPase, PEP-CTERM locus subfamily (TIGR03015; HMM-score: 24.1)
    Metabolism Central intermediary metabolism Nitrogen metabolism urease accessory protein UreG (TIGR00101; HMM-score: 17.1)
    Cellular processes Cellular processes Chemotaxis and motility flagellar biosynthesis protein FlhF (TIGR03499; HMM-score: 15.5)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair checkpoint protein rad24 (TIGR00602; HMM-score: 14.6)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA threonylcarbamoyl adenosine modification protein YjeE (TIGR00150; HMM-score: 13.1)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, subunit gamma and tau (TIGR02397; EC 2.7.7.7; HMM-score: 12.6)
    Genetic information processing Protein fate Protein folding and stabilization ATP-dependent chaperone protein ClpB (TIGR03346; HMM-score: 12.6)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, delta' subunit (TIGR00678; EC 2.7.7.7; HMM-score: 12.4)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 12)
    Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 12)
    Cellular processes Cellular processes Other gas vesicle protein GvpN (TIGR02640; HMM-score: 11.8)
    Cellular processes Cellular processes Pathogenesis type VI secretion ATPase, ClpV1 family (TIGR03345; HMM-score: 11.8)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VI secretion ATPase, ClpV1 family (TIGR03345; HMM-score: 11.8)
  • TheSEED: see HMPREF1038_02050
  • PFAM:
    P-loop_NTPase (CL0023) T2SSE; Type II/IV secretion system protein (PF00437; HMM-score: 164.4)
    and 29 more
    SRPRB; Signal recognition particle receptor beta subunit (PF09439; HMM-score: 20.7)
    Rad17; Rad17 P-loop domain (PF03215; HMM-score: 20.5)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 19.5)
    AAA_14; AAA domain (PF13173; HMM-score: 18.9)
    AAA_18; AAA domain (PF13238; HMM-score: 18.5)
    AAA_22; AAA domain (PF13401; HMM-score: 17.8)
    AAA_23; AAA domain (PF13476; HMM-score: 17.7)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 16.5)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 16.2)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 15.3)
    dNK; Deoxynucleoside kinase (PF01712; HMM-score: 15.1)
    cobW; CobW/HypB/UreG, nucleotide-binding domain (PF02492; HMM-score: 15)
    Zeta_toxin; Zeta toxin (PF06414; HMM-score: 14.9)
    AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 14.7)
    AAA_2; AAA domain (Cdc48 subfamily) (PF07724; HMM-score: 14.6)
    AFG1_ATPase; AFG1-like ATPase (PF03969; HMM-score: 14.4)
    ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 14.4)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 14.2)
    Roc; Ras of Complex, Roc, domain of DAPkinase (PF08477; HMM-score: 14.1)
    AAA_33; AAA domain (PF13671; HMM-score: 14.1)
    RNA_helicase; RNA helicase (PF00910; HMM-score: 13.7)
    ATP_bind_1; Conserved hypothetical ATP binding protein (PF03029; HMM-score: 13.4)
    AAA_25; AAA domain (PF13481; HMM-score: 13.2)
    AAA_30; AAA domain (PF13604; HMM-score: 13.1)
    NACHT; NACHT domain (PF05729; HMM-score: 12.8)
    PduV-EutP; Ethanolamine utilisation - propanediol utilisation (PF10662; HMM-score: 12.4)
    GTP_EFTU; Elongation factor Tu GTP binding domain (PF00009; HMM-score: 11.7)
    AAA_PrkA; PrkA AAA domain (PF08298; HMM-score: 11.7)
    Herpes_TK; Thymidine kinase from herpesvirus (PF00693; HMM-score: 11.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.89
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003824
    • TAT(Tat/SPI): 0.000275
    • LIPO(Sec/SPII): 0.000446
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001844680 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVQEIAQEIIRSARKKGTQDIYFVPKLDAYELHMRVGDERCKIGSYDFEKFAAVISHFKFVAGMNVGEKRRSQLGSCDYAYDQKMASLRLSTVGDYRGHESLVIRLLHDEEQDLHFWFQDIEELGKQYRQRGLYLFAGPVGSGKTTLMHELSKSLFKGQQVMSIEDPVEIKQDDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGETRDSETARAVVRASLTGATVFSTIHAKSIRGVYERLLELGVSEEELAVVLQGVCYQRLIGGGGIVDFANRDYQEHQAAKWNEQIDQLLKDGHITSLQAETEKISYS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=HMPREF1038_RS10060&oldid=77103"