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serotype 4
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670-6B
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Hu15
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Hu17
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INV104
serotype 1
INV200
serotype 14
JJA
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MDRSPN001
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NCTC7465
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NU83127
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SPN032672
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SPN034156
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SPN034183
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SPN994038
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SPN994039
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SPNA45
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ST556
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TCH8431/19A
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Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 04-FEB-2016

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae INV104
  • locus tag: INV104_17790 [new locus tag: INV104_RS10365 ]
  • pan locus tag?: PNEUPAN003698000
  • symbol: INV104_17790
  • pan gene symbol?: —
  • synonym:
  • product: putative exported protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: INV104_17790 [new locus tag: INV104_RS10365 ]
  • symbol: INV104_17790
  • product: putative exported protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1947432..1948574
  • length: 1143
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAAGAAAAGAATGTTATTAGCGTCAACAGTAGCCTTGTCATTTGCCCCAGTATTGGCA
    ACTCAAGCAGAAGAAGTTCTTTGGACTGCACGTAGTGTTGAGCAAATCCAAAACGATTTG
    ACTAAAACGGACAACAAAACAAGTTATACCGTACAGTATGGTGATACTTTGAGCACCATT
    GCAGAAGCCTTGGGTGTAGATGTCACAGTGCTTGCGAATCTGAACAAAATCACTAATATG
    GACTTGATTTTCCCAGAAACTGTTTTGACAACGACTGTCAATGAAGCAGAAGAAGTAACA
    GAAGTTGAAATCCAAACACCTCAAGCAGACTCTAGTGAAGAAGTGACAACTGCGACAGCA
    GATTTGACCACTAATCAAGTGACCGTTGATGATCAAACTGTTCAGGTTGCAGACCTTTCT
    CAACCAATTGCAGAAGCTCCAAAAGAAGTAGCATCAAGTTCAGAAGTTACAAAGACAGTG
    ATTGCTTCTGAAGAAGTGGCACCATCTACGGGCACTTCTGTCCCAGAGGAGCAAACGGCC
    GAAACAAGCAGTGCAGTTGCAGAAGAAGCTCCTCAGGGAACGACTCCAGCTGAGAAGCAG
    GAAACACAAGCAAGCCCTCAAGCTGCATCAGCAGTGGAAGCAACTACAACAAGTTCAGAA
    GCAAAAGAAGTAGCATCATCAAATGGAGCTACAGCAGCAGTTTCTACTTATCAACCAGAA
    GAGACGAAAATAATTTCAACAACTTACGAGGCTCCAGCTGCGCCCGATTATGCTGGACTT
    GCAGTAGCAAAATCTGAAAATGCAGGTCTTCAACCACAAACAGCTGCCTTTAAAGAAGAA
    ATTGCTAACTTGTTTGGCATTACATCCTTTAGCGGTTATCGTCCAGGAGACAGTGGAGAT
    CACGGAAAAGGTTTGGCTATCGACTTTATGGTACCAGAACGTTCAGAATTAGGGGATAAG
    ATTGCGGAATATGCTATTCAAAACATGGCCAGCCGTGGCATTAGTTACATCATCTGGAAA
    CAACGTTTCTATGCTCCATTCGATAGCAAATATGGGCCAGCTAACACTTGGAACCCAATG
    CCAGACCGTGGTAGTGTGACAGAAAATCACTATGATCACGTTCACGTTTCAATGAATGGA
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1143

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: INV104_17790 [new locus tag: INV104_RS10365 ]
  • symbol: INV104_17790
  • description: putative exported protein
  • length: 380
  • theoretical pI: 4.02709
  • theoretical MW: 40463.2
  • GRAVY: -0.347368

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination spore coat assembly protein SafA (TIGR02899; HMM-score: 16.8)
  • TheSEED  :
    • Group B streptococcal surface immunogenic protein
  • PFAM:
    LysM (CL0187) LysM; LysM domain (PF01476; HMM-score: 38.1)
    and 1 more
    no clan defined Macoilin; Macoilin family (PF09726; HMM-score: 4.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.0064
    • Cytoplasmic Membrane Score: 0.0227
    • Cell wall & surface Score: 0.4947
    • Extracellular Score: 0.4762
  • SignalP: Signal peptide SP(Sec/SPI) length 23 aa
    • SP(Sec/SPI): 0.989565
    • TAT(Tat/SPI): 0.001561
    • LIPO(Sec/SPII): 0.006498
    • Cleavage Site: CS pos: 23-24. TQA-EE. Pr: 0.8294
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CBW37460 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKRMLLASTVALSFAPVLATQAEEVLWTARSVEQIQNDLTKTDNKTSYTVQYGDTLSTIAEALGVDVTVLANLNKITNMDLIFPETVLTTTVNEAEEVTEVEIQTPQADSSEEVTTATADLTTNQVTVDDQTVQVADLSQPIAEAPKEVASSSEVTKTVIASEEVAPSTGTSVPEEQTAETSSAVAEEAPQGTTPAEKQETQASPQAASAVEATTTSSEAKEVASSNGATAAVSTYQPEETKIISTTYEAPAAPDYAGLAVAKSENAGLQPQTAAFKEEIANLFGITSFSGYRPGDSGDHGKGLAIDFMVPERSELGDKIAEYAIQNMASRGISYIIWKQRFYAPFDSKYGPANTWNPMPDRGSVTENHYDHVHVSMNG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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