From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 04-FEB-2016

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae INV104
  • locus tag: INV104_18530 [new locus tag: INV104_RS10865 ]
  • pan locus tag?: PNEUPAN003833000
  • symbol: INV104_18530
  • pan gene symbol?: fuc1
  • synonym:
  • product: putative fucosidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: INV104_18530 [new locus tag: INV104_RS10865 ]
  • symbol: INV104_18530
  • product: putative fucosidase
  • replicon: chromosome
  • strand: -
  • coordinates: 2041795..2043474
  • length: 1680
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGAAGAAAATCAAACCGCATGGACCGTTACCAAGTCAGACTCAGCTAGCTTATCTGGGA
    GATGAACTAGCAGCTTTTATCCACTTCGGTCCTAATACCTTTTATGACCAAGAATGGGGG
    ACTGGACAGGAGGATCCTGAGCGCTTTAACCCGAGTCAGTTGGATGCGCGTGAGTGGGTT
    CGTGTGCTCAAGGAAACGGGCTTCAAAAAGTTGATTTTGGTGGTCAAGCACCACGATGGC
    TTTGTCCTTTATCCGACAGCTCACACAGATTATTCGGTTAAGGTCAGTCCTTGGAGGAGA
    GGAAAGGGCGACTTGCTCCTTGAAGTATCCCAAGCTGCCACAGAGTTTGATATGGATATG
    GGGGTCTACCTGTCACCGTGGGATGCCCATAGTCCCCTCTATCATGTGGACCGAGAAGCG
    GACTACAATGCCTATTATCTGGCTCAGTTGAAGGAAATCTTATCAAATCCTAACTATGGG
    AATGCTGGTAAGTTCGCTGAGGTTTGGATGGATGGTGCCAGAGGAGAGGGCGCGCAAAAG
    GTTAATTATGAATTTGAAAAATGGTTTGAAACCATTCGTGACCTGCAGGGCGCTTGCTTG
    ATTTTTTCAACAGAAGGCACCAGTATCCGCTGGATTGGCAATGAACGAGGGTATGCAGGT
    GATCCACTGTGGCAAAAGGTGAATCCTGATAAACTAGGAACAGAAGCAGAGCTGAACTAT
    CTTCAGCACGGGGATCCCTCGGGCACGATTTTTTCAATCGGAGAGGCAGATGTTTCCATC
    CGTCCAGGCTGGTTCTACCATGAGGATCAGGATCCTAAGTCTCTCGAGGAGTTGGTCGAA
    ATCTACTTTCACTCAGTAGGGCGAGGAACTCCACTCTTGCTTAATATTCCGCCGAATCAA
    GCTGGGCTCTTTGATGCAAAGGATATTGAACGACTTTATGAATTTGCGACCTATCGCAAT
    GAGCTCTATAAAGAAGATTTGGCTCTGGGAGCTGAGGTATCTGGTCCAGCTCTTTCCGCA
    GACTTTGCTTGTCGCCATTTGACAGACGGCCTTGAGACCAGCTCTTGGGCAAGCGATGCA
    GACTTGCCCATCCAGTTAGAACTCGACTTAGGTTCTCCTAAAACTTTTGATGTAATTGAG
    TTAAGAGAAGATTTGAAGCTAGGGCAACGAATCGCTGCTTTCCATGTGCAAGTAGAGGTG
    GATGGTGTCTGGCAGGAATTTGGCAGGGGCTTCACAGTTGGTCATAAGCGCCTCTTGCGA
    GGTCCGCTAGTAGAGGCACAGAAGGTGCGCGTGATGATTACCGAAGCACAATCTATGCCT
    CTACTGACCAAGATTTCCCTTTATAAAACTCCTGGGTTATCAAAAAAAGAAGTTGTTCAG
    GAACTAGCATTTGCAGAAAAAAGCCTAGCTGTGGCAAAGGGAGAGACTCTTCATTTTAGG
    ATTGAACGTAGTGAAAGTAGCTCCTCTTTAGAGGCTAAGATTTCGATTCAACCGGGGACA
    GGTGTCCATGGTGTCGCCTATCAGGATGAGATTCAAGTCCTTCAATTCCAAGCAGGGGAA
    AGCAAAAAAGATTTGCATCTACCAACCCTGTATTTCGCAGGAGATAAAACCTTGGATTTC
    TATCTGAACCTAACGGTGGATGGTCAGCTTGTGGATCAACTTCAAGTCCAAGTTTCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: INV104_18530 [new locus tag: INV104_RS10865 ]
  • symbol: INV104_18530
  • description: putative fucosidase
  • length: 559
  • theoretical pI: 4.78082
  • theoretical MW: 62838.3
  • GRAVY: -0.372272

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • glycosyl hydrolase family 29 (alpha-L-fucosidase)
  • PFAM:
    Glyco_hydro_tim (CL0058) Alpha_L_fucos; Alpha-L-fucosidase (PF01120; HMM-score: 97.3)
    and 2 more
    GBD (CL0202) F5_F8_type_C; F5/8 type C domain (PF00754; HMM-score: 27.8)
    Glyco_hydro_tim (CL0058) GHL6; Hypothetical glycosyl hydrolase 6 (PF14871; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8765
    • Cytoplasmic Membrane Score: 0.0021
    • Cell wall & surface Score: 0.0099
    • Extracellular Score: 0.1115
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007569
    • TAT(Tat/SPI): 0.00038
    • LIPO(Sec/SPII): 0.000731
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CBW37534 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKIKPHGPLPSQTQLAYLGDELAAFIHFGPNTFYDQEWGTGQEDPERFNPSQLDAREWVRVLKETGFKKLILVVKHHDGFVLYPTAHTDYSVKVSPWRRGKGDLLLEVSQAATEFDMDMGVYLSPWDAHSPLYHVDREADYNAYYLAQLKEILSNPNYGNAGKFAEVWMDGARGEGAQKVNYEFEKWFETIRDLQGACLIFSTEGTSIRWIGNERGYAGDPLWQKVNPDKLGTEAELNYLQHGDPSGTIFSIGEADVSIRPGWFYHEDQDPKSLEELVEIYFHSVGRGTPLLLNIPPNQAGLFDAKDIERLYEFATYRNELYKEDLALGAEVSGPALSADFACRHLTDGLETSSWASDADLPIQLELDLGSPKTFDVIELREDLKLGQRIAAFHVQVEVDGVWQEFGRGFTVGHKRLLRGPLVEAQKVRVMITEAQSMPLLTKISLYKTPGLSKKEVVQELAFAEKSLAVAKGETLHFRIERSESSSSLEAKISIQPGTGVHGVAYQDEIQVLQFQAGESKKDLHLPTLYFAGDKTLDFYLNLTVDGQLVDQLQVQVS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=INV104_18530&oldid=96729"