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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 23-MAR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BVJ1JL
  • locus tag: JN057_01158 [new locus tag: JN057_RS05610 ]
  • pan locus tag?: PNEUPAN002247000
  • symbol: rluD_2
  • pan gene symbol?: rluD3
  • synonym:
  • product: Ribosomal large subunit pseudouridine synthase D

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JN057_01158 [new locus tag: JN057_RS05610 ]
  • symbol: rluD_2
  • product: Ribosomal large subunit pseudouridine synthase D
  • replicon: chromosome
  • strand: +
  • coordinates: 1080286..1081182
  • length: 897
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP071871 (1080286..1081182) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0984 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAGGTTTGAATTTATCGCAGATGAACATGTCAAGGTTAAGACCTTTTTAAAAAAGCAC
    GAGGTTTCTAAGGGATTGCTGGCTAAGATTAAGTTTCGAGGTGGAGCTATTCTGGTCAAT
    AATCAACCGCAAAATGCAACGTATCTATTGGACGTTGGAGACTACGTTACCATTTACATT
    CCCGCTGAGGAAGGCTTTGAAACCTTGGAGGCTATTGAGCATCCATTAGATATTCTCTAT
    GAGGATGACCACTTTCTAGTCTTGAATAAACCCTATGGAGTGGCTTCTATTCCTAGTGTC
    AATCACTCTAACACCATTGCCAATTTTATCAAGGGTTACTATGTCAAGCAAAATTATGAA
    AATCAGCAGGTTCACATTGTTACCAGACTAGATAGGGACACTTCTGGCTTGATGCTCTTT
    GCCAAGCACGGTTATGCCCATGCACGATTAGACAAGCAGTTGCAGAAGAAATCTATCGAG
    AAACGCTACTTTGCTTTGGTTAAGGGAGATGGACATTTGGAGCCAGAAGGGGAAATTATT
    GCTCCGATTGCGCGTGATGAAGATTCCATTATTACCAGACGAGTGGCTAAAGGCGGAAAG
    TATGCCCATACTTCATACAAGATTGTAGCTTCTTATGGAAATATTCACTTGGTCTATATT
    CACCTGCACACTGGTCGAACCCATCAAATCCGAGTCCATTTTTCTCATATCGGTTTTCCT
    TTGCTGGGAGATGATTTGTATGGTGGTAGTCTGGAAGATGGTATTCAACGTCAGGCTCTG
    CATTGCCATTACCTATCCTTTTATCATCCATTTTTAGAGCAAGACTTGCAGTTAGAAAGT
    CCCTTGCCGGATGATTTCAGTAACCTTATTACCCAGTTATCAACTAATACTCTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    897

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JN057_01158 [new locus tag: JN057_RS05610 ]
  • symbol: RluD_2
  • description: Ribosomal large subunit pseudouridine synthase D
  • length: 298
  • theoretical pI: 6.94468
  • theoretical MW: 33966.4
  • GRAVY: -0.300671

⊟Function[edit | edit source]

  • reaction:
    EC 5.4.99.23?  ExPASy
    23S rRNA pseudouridine(1911/1915/1917) synthase 23S rRNA uridine1911/uridine1915/uridine1917 = 23S rRNA pseudouridine1911/pseudouridine1915/pseudouridine1917
  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase, RluA family (TIGR00005; EC 5.4.99.-; HMM-score: 240.3)
    and 3 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase Rlu family protein, TIGR01621 (TIGR01621; EC 5.4.99.-; HMM-score: 90)
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase (TIGR00093; EC 5.4.99.-; HMM-score: 39.4)
    Metabolism Energy metabolism TCA cycle isocitrate dehydrogenase, NADP-dependent (TIGR00127; EC 1.1.1.42; HMM-score: 10)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    PseudoU_synth (CL0649) PseudoU_synth_2; RNA pseudouridylate synthase (PF00849; HMM-score: 113.7)
    and 1 more
    S4 (CL0492) S4_2; S4 domain (PF13275; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002661
    • TAT(Tat/SPI): 0.000447
    • LIPO(Sec/SPII): 0.000478
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: QTE32757 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRFEFIADEHVKVKTFLKKHEVSKGLLAKIKFRGGAILVNNQPQNATYLLDVGDYVTIYIPAEEGFETLEAIEHPLDILYEDDHFLVLNKPYGVASIPSVNHSNTIANFIKGYYVKQNYENQQVHIVTRLDRDTSGLMLFAKHGYAHARLDKQLQKKSIEKRYFALVKGDGHLEPEGEIIAPIARDEDSIITRRVAKGGKYAHTSYKIVASYGNIHLVYIHLHTGRTHQIRVHFSHIGFPLLGDDLYGGSLEDGIQRQALHCHYLSFYHPFLEQDLQLESPLPDDFSNLITQLSTNTL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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