From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-OCT-2023

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BVJ1JL
  • locus tag: JN057_01315 [new locus tag: JN057_RS06370 ]
  • pan locus tag?: PNEUPAN002532000
  • symbol: pdg
  • pan gene symbol?: nth
  • synonym:
  • product: Ultraviolet N-glycosylase/AP lyase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JN057_01315 [new locus tag: JN057_RS06370 ]
  • symbol: pdg
  • product: Ultraviolet N-glycosylase/AP lyase
  • replicon: chromosome
  • strand: -
  • coordinates: 1255936..1256565
  • length: 630
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP071871 (1255936..1256565) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1135 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGGTCTTGTCAAAAAAACGAGCACGAAAGGTGCTAGAAGAAATCATTGCCCTCTTCCCA
    GATGCCAAGCCTAGTCTTGATTTTACCAATCATTTTGAACTCCTGGTTGCGGTCATGTTA
    TCAGCCCAGACGACAGATGCAGCGGTAAATAAGGCCACACCAGGTCTCTTTGTTGCCTTT
    CCAACACCCCAAGCTATGTCTGTAGCGACAGAGAGTGAGATTGCTTCACATATTTCTCGC
    TTGGGATTGTATCGGAATAAAGCTAAATTCCTTAAAAAATGTGCCCAACAGTTACTAGAC
    GATTTTGATGGTCAAGTCCCTCAGACACGTGAAGAATTGGAGAGTTTGGCAGGTGTTGGT
    CGCAAGACAGCCAATGTTGTCATGAGTGTAGGATTTGGGATTCCAGCCTTTGCAGTGGAT
    ACTCATGTGGAGCGTATTTGCAAACACCACGATATTGTCAAAAAATCAGCGACGCCACTT
    GAGGTGGAAAAGCGGGTCATGGATATCTTGCCGCCTGAGCAGTGGTTAGCTGCCCATCAG
    GCCATGATTTATTTTGGAAGAGCCATTTGCCATCCAAAAAATCCAGAGTGTGACCAGTAC
    CCACAATTATATGATTTTAGCAATTTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    630

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JN057_01315 [new locus tag: JN057_RS06370 ]
  • symbol: Pdg
  • description: Ultraviolet N-glycosylase/AP lyase
  • length: 209
  • theoretical pI: 7.58287
  • theoretical MW: 23276.8
  • GRAVY: -0.101914

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair endonuclease III (TIGR01083; EC 4.2.99.18; HMM-score: 234.4)
    and 2 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair A/G-specific adenine glycosylase (TIGR01084; EC 3.2.2.-; HMM-score: 86.4)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair 8-oxoguanine DNA-glycosylase (ogg) (TIGR00588; EC 3.2.2.-; HMM-score: 30.3)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    HHH (CL0198) HhH-GPD; HhH-GPD superfamily base excision DNA repair protein (PF00730; HMM-score: 83.2)
    and 3 more
    HHH; Helix-hairpin-helix motif (PF00633; HMM-score: 38.3)
    HHH_5; Helix-hairpin-helix domain (PF14520; HMM-score: 17.4)
    no clan defined TRAPPC9-Trs120; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit (PF08626; HMM-score: 11.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9341
    • Cytoplasmic Membrane Score: 0.015
    • Cell wall & surface Score: 0.005
    • Extracellular Score: 0.0459
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.049045
    • TAT(Tat/SPI): 0.009167
    • LIPO(Sec/SPII): 0.003281
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: QTE32904 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVLSKKRARKVLEEIIALFPDAKPSLDFTNHFELLVAVMLSAQTTDAAVNKATPGLFVAFPTPQAMSVATESEIASHISRLGLYRNKAKFLKKCAQQLLDDFDGQVPQTREELESLAGVGRKTANVVMSVGFGIPAFAVDTHVERICKHHDIVKKSATPLEVEKRVMDILPPEQWLAAHQAMIYFGRAICHPKNPECDQYPQLYDFSNL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=JN057_01315&oldid=61224"