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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 24-MAR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BVJ1JL
  • locus tag: JN057_RS05155 [old locus tag: JN057_01057 ]
  • pan locus tag?: PNEUPAN002398000
  • symbol: JN057_RS05155
  • pan gene symbol?: —
  • synonym:
  • product: DUF5945 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JN057_RS05155 [old locus tag: JN057_01057 ]
  • symbol: JN057_RS05155
  • product: DUF5945 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 996741..997124
  • length: 384
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP071871 (996741..997124) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGACAAAAGATTGGAATTTTAATCAACCATTAGAAAGTAAATCAGAAAATCAAGAAGAT
    CCAGATAAAATTGCGGCCTTATTTGGAAATCATCAAGGAGGTAATGATGTAAATTATGAA
    GCAGCTTTTCAAAAGCGCAAACAAGCACCTGTGACGGAATCAAATTCTAGTTCTAAACCC
    AAAGTTACAGAGGTTAGAACAGGAAAAGAGACAGATATCACTACAAGTTATCAGCAACAT
    CTTAAAAGACTTATTGCGGATAACAATAGCGATATTCAAAGTAGTCAAAAGAAAATTGAA
    GAGCTACATACGTTGATTGACACAAAGAATAAAGAAAATAAGAAATTGCAGTCCATTTAT
    GATGCGATTTCCGAATTACACTAA
    60
    120
    180
    240
    300
    360
    384

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JN057_RS05155 [old locus tag: JN057_01057 ]
  • symbol: JN057_RS05155
  • description: DUF5945 family protein
  • length: 127
  • theoretical pI: 6.5234
  • theoretical MW: 14474.8
  • GRAVY: -1.18819

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other coenzyme PQQ precursor peptide PqqA (TIGR02107; HMM-score: 11.4)
  • TheSEED: data available for Hungary19A-6
  • PFAM:
    no clan defined DUF5945; Family of unknown function (DUF5945) (PF19370; HMM-score: 99.3)
    and 8 more
    FliD_C; Flagellar hook-associated protein 2 C-terminus (PF07195; HMM-score: 15.5)
    Cor1; Cor1/Xlr/Xmr conserved region (PF04803; HMM-score: 14.4)
    Sec2p; GDP/GTP exchange factor Sec2p (PF06428; HMM-score: 14)
    GAG-polyprotein (CL0523) DUF1759; Protein of unknown function (DUF1759) (PF03564; HMM-score: 13.7)
    no clan defined Cep57_CLD_2; Centrosome localisation domain of PPC89 (PF14197; HMM-score: 13.5)
    SpoIIIAH; SpoIIIAH-like protein (PF12685; HMM-score: 13)
    DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 10.6)
    OSTbeta; Organic solute transporter subunit beta protein (PF15048; HMM-score: 10.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015059
    • TAT(Tat/SPI): 0.004582
    • LIPO(Sec/SPII): 0.003364
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000159216 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTKDWNFNQPLESKSENQEDPDKIAALFGNHQGGNDVNYEAAFQKRKQAPVTESNSSSKPKVTEVRTGKETDITTSYQQHLKRLIADNNSDIQSSQKKIEELHTLIDTKNKENKKLQSIYDAISELH

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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