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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 05-OCT-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae MDRSPN001
  • locus tag: MDRSPN_00892 [new locus tag: MDRSPN_RS04710 ]
  • pan locus tag?: PNEUPAN002007000
  • symbol: MDRSPN_00892
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MDRSPN_00892 [new locus tag: MDRSPN_RS04710 ]
  • symbol: MDRSPN_00892
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 904254..904568
  • length: 315
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AP018391 (904254..904568) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGGCAAGTAAAAGATTAAGTATTGAAGAACAGATTGAAAAGAAAGAAGAAAGCATTAAG
    CAATTACAAAATCAAAAAAGACAGTTGAAGAAAAAACTTAATGAACAAGAAAGAAAAGCA
    AGAAACAAAAGACTTATAGAAAAAGGTGCAGTGTTTGAAAGTATTTTTGAAGAAAGTATT
    GATTTAACAAAAGATGAATTTTATAAGTTAATAAAAACGTTAAATGATGAAGAAATAAGA
    TTAAACATAATGGAAATTTTAGAAGAAAGAATAGATGATAATGTAGAAAAATCATCTAAA
    GATGAAATAACATAA
    60
    120
    180
    240
    300
    315

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MDRSPN_00892 [new locus tag: MDRSPN_RS04710 ]
  • symbol: MDRSPN_00892
  • description: hypothetical protein
  • length: 104
  • theoretical pI: 5.12613
  • theoretical MW: 12497.2
  • GRAVY: -1.10385

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Pathogenesis type III secretion regulator YopN/LcrE/InvE/MxiC (TIGR02568; HMM-score: 12.1)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type III secretion regulator YopN/LcrE/InvE/MxiC (TIGR02568; HMM-score: 12.1)
    PRTRC system protein E (TIGR03741; HMM-score: 10.2)
  • TheSEED:
  • PFAM:
    no clan defined DUF3847; Protein of unknown function (DUF3847) (PF12958; HMM-score: 58.3)
    and 6 more
    DUF2802; Protein of unknown function (DUF2802) (PF10975; HMM-score: 15.4)
    HTH (CL0123) SLIDE; SLIDE (PF09111; HMM-score: 12.3)
    no clan defined Spc24; Spc24 subunit of Ndc80 (PF08286; HMM-score: 10.5)
    RRP14; 60S ribosome biogenesis protein Rrp14 (PF15459; HMM-score: 9.2)
    TMEM192; TMEM192 family (PF14802; HMM-score: 7.2)
    LMBR1; LMBR1-like membrane protein (PF04791; HMM-score: 5.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9261
    • Cytoplasmic Membrane Score: 0.0222
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.051
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002513
    • TAT(Tat/SPI): 0.000318
    • LIPO(Sec/SPII): 0.000462
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBA59095 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MASKRLSIEEQIEKKEESIKQLQNQKRQLKKKLNEQERKARNKRLIEKGAVFESIFEESIDLTKDEFYKLIKTLNDEEIRLNIMEILEERIDDNVEKSSKDEIT

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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