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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-DEC-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae MDRSPN001
  • locus tag: MDRSPN_RS10715 [old locus tag: MDRSPN_02035 ]
  • pan locus tag?: PNEUPAN003930000
  • symbol: yfmH
  • pan gene symbol?: yfmH
  • synonym:
  • product: EF-P 5-aminopentanol modification-associated protein YfmH

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MDRSPN_RS10715 [old locus tag: MDRSPN_02035 ]
  • symbol: yfmH
  • product: EF-P 5-aminopentanol modification-associated protein YfmH
  • replicon: chromosome
  • strand: -
  • coordinates: 2024858..2026141
  • length: 1284
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_AP018391 (2024858..2026141) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_2051 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGACAAAGGTTGTTTTTGAAGAAAAATACTATCCAGCTGTAAAAGAAAAGGTTTATCGA
    ACTCGTTTGGCCAACGGATTGACAGTTGCTCTTTTGCCTAAAAAGGAATTTAAAGAGGTT
    TACGGGAGTGTCACTGTACAGTTTGGTTCGGTAGATACGTTTGTCACAGAAGTTGACGGA
    GATGTAAAACAATATCCTGGAGGAATTGCTCATTTTCTTGAACATAAATTATTTGAGAGA
    GAAGATTCTAGTGATTTGATGTCGGCTTTTACGAGTCTAGGTGCAGATAGTAATGCCTTT
    ACAAGCTTTACAAAAACAAACTATCTTTTTTCAGCAACGGATTATTTTTTAGAAAATTTA
    TATTTACTTGATGAATTGGTAACATCAGCACACTTTACTGAAGCTTCCATTCTGACAGAG
    CAGGATATTATTCAGCAAGAACGAGAAATGTACCAAGATGATCCAGATTCGTGTTTATTC
    TTTTCAACTTTAGCGAATTTGTATCCTGGTACACCTTTAGCAACTGATATAGTTGGAAGT
    GAGGAGTCCATTTCCCAAATCAATCTAACTAATTTGCAAGAAAATTTTACAAAGTTTTAC
    AAACCTGTAAACATGTCTCTGTTTTTAGTTGGTAATTTTGATGTGGAGCGAGTACAGGAC
    TATTTTGAAAGCAAAGAACTGAAAGATTCAGATTTTCAGGAAGTAGCAAGAGAAAAGTTG
    TTTTTACAGCCTGTAAAGCCAACAGATAGTATGAGAATGGAAGTATCTTCTCCCAAACTA
    GCGATTGGAGTTAGAGGTAAGCGAGAAGTTTCTGAAGCGGATTGCTATCGACATCATATT
    TTATTAAAATTATTGTTTGCAATGATGTTTGGTTGGACTTCGGATCGTTTTCAAAAATGT
    TATGAATCAGGTAAAATTGATGCATCCTTATCTCTGGAAGTTGAAGTAACAAGTCGCTTT
    CATTTTGTCATGTTGACAATGGATACGAAAGAGCCAGTTGCTTTGTCTCATCAATTTAGG
    AAGGCTATTCGTAATTTTACAAAGGATTTAGATATTACAGAGGAACATTTAGATATTATC
    AAAAGAGAGATGTTTGGCGAATTTTTCAGTAGCATGAACTCTCTTGAATTTATTGCAACG
    CAATATGATGCTTTTGAAAATGGTGAGACAATTTTTGATTTGCCGAAAATTTTACAGGAA
    ATTACTTTAGAGGATGTCCTTGATGCTGGACATCATTTAATAGATGATGGTGACATAGTT
    GATTTTACAATATTCCCATCGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1284

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MDRSPN_RS10715 [old locus tag: MDRSPN_02035 ]
  • symbol: YfmH
  • description: EF-P 5-aminopentanol modification-associated protein YfmH
  • length: 427
  • theoretical pI: 4.40016
  • theoretical MW: 48996.1
  • GRAVY: -0.225527

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other coenzyme PQQ biosynthesis protein PqqF (TIGR02110; EC 3.4.24.-; HMM-score: 46.5)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Peptidase_ME (CL0094) Peptidase_M16_C; Peptidase M16 inactive domain (PF05193; HMM-score: 55.1)
    Peptidase_M16; Insulinase (Peptidase family M16) (PF00675; HMM-score: 49.4)
    and 2 more
    no clan defined MetOD2; Metanogen output domain 2 (PF18548; HMM-score: 12.4)
    DUF3770; Protein of unknown function (DUF3770) (PF12603; HMM-score: 11.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9616
    • Cytoplasmic Membrane Score: 0.0153
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0231
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015067
    • TAT(Tat/SPI): 0.001405
    • LIPO(Sec/SPII): 0.001157
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000170193 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTKVVFEEKYYPAVKEKVYRTRLANGLTVALLPKKEFKEVYGSVTVQFGSVDTFVTEVDGDVKQYPGGIAHFLEHKLFEREDSSDLMSAFTSLGADSNAFTSFTKTNYLFSATDYFLENLYLLDELVTSAHFTEASILTEQDIIQQEREMYQDDPDSCLFFSTLANLYPGTPLATDIVGSEESISQINLTNLQENFTKFYKPVNMSLFLVGNFDVERVQDYFESKELKDSDFQEVAREKLFLQPVKPTDSMRMEVSSPKLAIGVRGKREVSEADCYRHHILLKLLFAMMFGWTSDRFQKCYESGKIDASLSLEVEVTSRFHFVMLTMDTKEPVALSHQFRKAIRNFTKDLDITEEHLDIIKREMFGEFFSSMNSLEFIATQYDAFENGETIFDLPKILQEITLEDVLDAGHHLIDDGDIVDFTIFPS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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