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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 03-AUG-2015
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ST556
- locus tag: MYY_0326 [new locus tag: MYY_RS01680 ]
- pan locus tag?: PNEUPAN000975000
- symbol: MYY_0326
- pan gene symbol?: —
- synonym:
- product: AraC family transcriptional regulator
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: MYY_0326 [new locus tag: MYY_RS01680 ]
- symbol: MYY_0326
- product: AraC family transcriptional regulator
- replicon: chromosome
- strand: -
- coordinates: 288118..288315
- length: 198
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP003357 (288118..288315) NCBI
- BioCyc: see MYY_RS01680
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0228 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGACTCTAAATGAATATATCTTACAATATCGCCTGAAACAAGCTATAGATAAGATGGCT
GAATCTCCCAACTCCCCTTTAAGCGCTATCTCTGACCAAGTTGGATTTTCAGACTATAAA
TATTTTGCCAAAGTATTTAAAAAGTATCTCCATATTTCCCCAAAGAAATTGAAATCACTC
GGAAGAATAGTCAAATAG60
120
180
198
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: MYY_0326 [new locus tag: MYY_RS01680 ]
- symbol: MYY_0326
- description: AraC family transcriptional regulator
- length: 65
- theoretical pI: 10.3755
- theoretical MW: 7540.84
- GRAVY: -0.361538
⊟Function[edit | edit source]
- TIGRFAM: YSIRK-targeted surface antigen transcriptional regulator (TIGR04094; HMM-score: 30.1)and 1 more4-hydroxyphenylacetate catabolism regulatory protein HpaA (TIGR02297; HMM-score: 18.2)
- TheSEED :
- Transcriptional regulator, AraC family
- PFAM: HTH (CL0123) HTH_18; Helix-turn-helix domain (PF12833; HMM-score: 45.3)and 1 moreHTH_AraC; Bacterial regulatory helix-turn-helix proteins, AraC family (PF00165; HMM-score: 28.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.87
- Cytoplasmic Membrane Score: 0.0756
- Cell wall & surface Score: 0.0048
- Extracellular Score: 0.0496
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006218
- TAT(Tat/SPI): 0.00063
- LIPO(Sec/SPII): 0.001066
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: AFC93988 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTLNEYILQYRLKQAIDKMAESPNSPLSAISDQVGFSDYKYFAKVFKKYLHISPKKLKSLGRIVK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0228 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]