From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 10-NOV-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ST556
  • locus tag: MYY_RS00430 [old locus tag: MYY_0079 ]
  • pan locus tag?: PNEUPAN000636000
  • symbol: MYY_RS00430
  • pan gene symbol?: —
  • synonym:
  • product: phage scaffolding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MYY_RS00430 [old locus tag: MYY_0079 ]
  • symbol: MYY_RS00430
  • product: phage scaffolding protein
  • replicon: chromosome
  • strand: +
  • coordinates: 62492..63055
  • length: 564
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_017769 (62492..63055) NCBI
  • BioCyc: MYY_RS00430 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGGCATTTACAACTGAAGAACTACTCAATCTTGGGTTGACAGAAGAACAGGCTAAGTCA
    GTCTTTGCTTTGCGAGGAAAAGAGCTGAATGAGGACAAATCAGCCTTAGAAACTATCAAA
    CAAGAGCGAGATAGTCTCAAATCACAGTTGCAAAAAGCAGAGGAGCAAGTTGAACACTTG
    AAATCACTTGAGAATATCAGCGCTGAACAAAAAGATGCGATTGATAAATTGCAAGCTGAA
    TATGACAAGTATAAAAACGAAGCTGCAGCTGAACTTGCACAGACAAAAAAGGTTAGTGCT
    ATCAGTCTAGCTCTGAAAGATACAAATGCTTTCAATCCAGACAAATTGATGAAATTCATT
    GATGTTGATGCTATCCAGTTAGACGACAACGGGAAACCTCAGATTGATGAAGTAATCAAC
    GGTTTAAAAGAAAGTGATCCATATCTGTTCAAAGCTGAAGAAAGTAAGCCTAGCCCCAAT
    ATTTTACCTCAAGGTAATCCGGCAGGAGAGGGTACAAGTGATGTTGATCCGTTCCAAGCG
    ATTATTGACGGGTATGGCAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    564

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MYY_RS00430 [old locus tag: MYY_0079 ]
  • symbol: MYY_RS00430
  • description: phage scaffolding protein
  • length: 187
  • theoretical pI: 4.29171
  • theoretical MW: 20684.9
  • GRAVY: -0.701604

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 15.2)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 15.2)
    Hypothetical proteins Conserved TIGR02680 family protein (TIGR02680; HMM-score: 13.8)
    and 9 more
    Plasmodium yoelii subtelomeric family PYST-B (TIGR01597; HMM-score: 11.5)
    Genetic information processing Protein synthesis tRNA aminoacylation serine--tRNA ligase (TIGR00414; EC 6.1.1.11; HMM-score: 11.3)
    SH3 domain protein (TIGR04211; HMM-score: 11.3)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 9.8)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 9.8)
    SEC10/PgrA surface exclusion domain (TIGR04320; HMM-score: 9.6)
    two transmembrane protein (TIGR04527; HMM-score: 7.2)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 6.9)
    Metabolism Transport and binding proteins Unknown substrate efflux transporter, RND family, MFP subunit (TIGR01730; HMM-score: 6.5)
  • TheSEED: see MYY_0079
  • PFAM:
    no clan defined Phage_GP20; Phage minor structural protein GP20 (PF06810; HMM-score: 108.2)
    and 23 more
    Gp-FAR-1; Nematode fatty acid retinoid binding protein (Gp-FAR-1) (PF05823; HMM-score: 18.7)
    Golgin_A5; Golgin subfamily A member 5 (PF09787; HMM-score: 16.9)
    zf-C4H2; Zinc finger-containing protein (PF10146; HMM-score: 15.6)
    Med9; RNA polymerase II transcription mediator complex subunit 9 (PF07544; HMM-score: 15)
    GAS; Growth-arrest specific micro-tubule binding (PF13851; HMM-score: 13.9)
    LTXXQ-like (CL0515) LTXXQ; LTXXQ motif family protein (PF07813; HMM-score: 13.5)
    P-loop_NTPase (CL0023) iSTAND; inactive STAND (PF19995; HMM-score: 13.4)
    no clan defined EcoRI_methylase; Adenine-specific methyltransferase EcoRI (PF13651; HMM-score: 12.8)
    DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 12.4)
    HXXSHH; Protein of unknown function (DUF1552) (PF07586; HMM-score: 12.1)
    UPF0242; Uncharacterised protein family (UPF0242) N-terminus (PF06785; HMM-score: 11.5)
    TetR_C (CL0174) TetR_C_23; Tetracyclin repressor-like, C-terminal domain (PF17931; HMM-score: 11)
    Glyoxalase (CL0104) Glyoxalase_8; Glyoxalase superfamily protein (PF20066; HMM-score: 11)
    BCLiA (CL0551) ATG14; Vacuolar sorting 38 and autophagy-related subunit 14 (PF10186; HMM-score: 10.9)
    no clan defined FlaC_arch; Flagella accessory protein C (FlaC) (PF05377; HMM-score: 10.3)
    GT-B (CL0113) FUT8_N_cat; Alpha-(1,6)-fucosyltransferase N- and catalytic domains (PF19745; HMM-score: 9.5)
    no clan defined TMPIT; TMPIT-like protein (PF07851; HMM-score: 9.4)
    DUF4252; Domain of unknown function (DUF4252) (PF14060; HMM-score: 9.4)
    Pec_lyase-like (CL0268) FapA; Flagellar Assembly Protein A beta solenoid domain (PF03961; HMM-score: 8.9)
    no clan defined Herpes_UL6; Herpesvirus UL6 like (PF01763; HMM-score: 8.7)
    GrpE; GrpE (PF01025; HMM-score: 7.5)
    APG6_N; Apg6 coiled-coil region (PF17675; HMM-score: 7.4)
    V_ATPase_I; V-type ATPase 116kDa subunit family (PF01496; HMM-score: 6.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003334
    • TAT(Tat/SPI): 0.000457
    • LIPO(Sec/SPII): 0.000567
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000896122 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MAFTTEELLNLGLTEEQAKSVFALRGKELNEDKSALETIKQERDSLKSQLQKAEEQVEHLKSLENISAEQKDAIDKLQAEYDKYKNEAAAELAQTKKVSAISLALKDTNAFNPDKLMKFIDVDAIQLDDNGKPQIDEVINGLKESDPYLFKAEESKPSPNILPQGNPAGEGTSDVDPFQAIIDGYGK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=MYY_RS00430&oldid=158272"