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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000108000
- symbol?: —
- synonym:
- description?: AAA family ATPase
- AAA family ATPase
- conserved hypothetical protein
- SMC faily protein
- phosphoesterase
- phosphoesterase, putative
- PHP N-terminal domain protein
- putative phosphoesterase
- putative uncharacterized protein
- putative uncharacterized protein (pseudogene)
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 88233..89105
- occurrence?: in 60% of 43 strains
⊟Orthologs[edit | edit source]
Hu15:
—
Hu17:
—
INV104:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MRGFNNKIKSVYQELTNSKEKFGSFHKTLIHLHTPVSYDYKLFSNWTATKYRKITEDELY
D39 MRGFNNKIKSVYQELTNSKEKFGSFHKTLIHLHTPVSYDYKLFSNWTATKYRKITEDELY
D39V MRGFNNKIKSVYQELTNSKEKFGSFHKTLIHLHTPVSYDYKLFSNWTATKYRKITEDELY
EF3030 ------------------------------------------------------------
TIGR4 DIFFENKKIKVDKTIFFSNFDKVVFSSSKEYISFLMLAEAIIKNGIEIVVVTDHNTTKGI
D39 DIFFENKKIKVDKTIFFSNFDKVVFSSSKEYISFLMLAEAIIKNGIEIVVVTDHNTTKGI
D39V DIFFENKKIKVDKTIFFSNFDKVVFSSSKEYISFLMLAEAIIKNGIEIVVVTDHNTTKGI
EF3030 -----------------------------------MLAEAIIKNGIEIVVVTDHNTTKGI
*************************
TIGR4 KKLQMAVSIIMKNYPIYDIHPHILHGVEISAADKLHIVCIYDYEQESWVNQWLSENIISE
D39 KKLQMAVSIIMKNYPIYDIHPHILHGVEISAADKLHIVCIYDYEQESWVNQWLSENIISE
D39V KKLQMAVSIIMKNYPIYDIHPHILHGVEISAADKLHIVCIYDYEQESWVNQWLSENIISE
EF3030 KKLQMAVSIIMKNYPIYDIHPHILHGVEISAADKLHIVCIYDYEQESWVNQWLSENIISE
************************************************************
TIGR4 KDGSYQHSLTIMKDFNNQKIVNYIAHFNSYDILKKGSHLSGAYKRKIFSKENTRFWSLIL
D39 KDGSYQHSLTIMKDFNNQKIVNYIAHFNSYDILKKGSHLSGAYKRKIFSKENTRFWSLIL
D39V KDGSYQHSLTIMKDFNNQKIVNYIAHFNSYDILKKGSHLSGAYKRKIFSKENTRFWSLIL
EF3030 KDGSYQHSLTIMKDFNNQKIVNYIAHFNSYDILKKGSHLSGAYKRKIFSKENTRFLEFNI
******************************************************* .: :
TIGR4 TRKNLRNNLIFSIKKL------------------------------------------VY
D39 TRKNLRNNLIFSIKKL------------------------------------------VY
D39V TRKNLRNNLIFSIKKL------------------------------------------VY
EF3030 NSKESSQQLDILYKEVGVLSLGQKVVAMLDFLLAYSDYSKDFRPLIIDQPEDNLDNRYIY
. *: ::* : *:: :*
TIGR4 ------------------------------------------------------------
D39 ------------------------------------------------------------
D39V ------------------------------------------------------------
EF3030 RHLVQQFRDVKAQRQIILATHNATIVTNSMTDQVVIMESDGVNGWIESQGYVSEKYIKNH
TIGR4 -------------------------
D39 -------------------------
D39V -------------------------
EF3030 IINQLEGGKDSFKHKMSIYETALSE