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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000272000
- symbol?: hsdS
- synonym:
- description?: restriction endonuclease subunit S
- restriction endonuclease subunit S
- Type I site-specific deoxyribonuclease chain S
- type I restriction-modification system S protein (pseudogene)
- Type-1 restriction enzyme EcoKI specificity
- type I restriction modification DNA specificity domain protein
- type I restriction-modification system, S subunit
- type I restriction-modification system S protein
- putative type I restriction-modification system S protein
- Type I restriction modification DNA specificity domain
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 253458..1739119
- occurrence?: in 56% of 43 strains
⊟Orthologs[edit | edit source]
(19F)
BM6001:
—
(1)
BVJ1JL:
—
(14)
CGSP14:
—
(19A)
Hu15:
—
(19A)
Hu17:
—
(1)
INV104:
—
⊟Genome Viewer[edit | edit source]
| D39 | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
D39 MTPEQLKASILQRAMEGKLVPQNPNDEPASELLKRIKAEKEKLISEGKIKRDKKETEIFR
Hungary19A-6 MTPEQLKASILQRAMEGKLVPQNPNDEPASELLKRIKAEKEKLISEGKIKRDKKETEIFR
************************************************************
D39 GDDGKHYGKFADGSTQEIDVPYDIPDTWEWVRFSTLVEIVRGGSPRPIKDYLTSEVDGIN
Hungary19A-6 GDDGKHYGKFADGSTQEIDVPYDIPDTWEWVRFSTLVEIVRGGSPRPIKDYLTSEVDGIN
************************************************************
D39 WIKIGDTEKGEKYINNVKEKIKKSGLNKTRFVKKGTFLLTNSMSFGRPYILNVDGAIHDG
Hungary19A-6 WIKIGDTEKGEKYINNVKEKIKKSGLNKTRFVKKGTFLLTNSMSFGRPYILNVDGAIHDG
************************************************************
D39 WLAISNYENSLNKDYLFYILSSNVVYSQFLSLISGAVVKNLNSDKVASILIPLPPLSEQQ
Hungary19A-6 WLAISNYENSLNKDYLFYILSSNVVYSQFLSLISGAVVKNLNSDKVASILIPLPPLSEQQ
************************************************************
D39 RIIEAIESALEKVDEYAESYNRLEQLDKEFPDKLKKSILQYAMQGKLVEQDPNDESVEVL
Hungary19A-6 RIIEAIESALEKVDEYAESYNRLEQLDKEFPDKLKKSILQYAMQGKLVEQDPNDESVEVL
************************************************************
D39 LEKIRAEKQKLFEEGKIKKKDLDISIVSQGDDNSYY---EEVPC----EIPESWEWVRLN
Hungary19A-6 LEKIRAEKQKLFEEGKIKKKDLDISIVSQGDDNSYYGNKDETTSYPIYEIPEAWRYIKFA
************************************ :*... ****:*.::::
D39 DITSYIQRGKSPKYSNIPIY----PVIAQKCNQWSGFSIDLARFIDPETVHSYQKERLLR
Hungary19A-6 SLVNF-RIGKTPPRSEATFWGTEIPWVSISDMPISGYVTNTRESISKLALKSKKIDISPK
.:..: : **:* *: .:: * :: . **: : . *. :::* : : :
D39 DGDLMWNSTGLGTLGRLAIYHENKNPYAWAVADSHVTVIRVLSGVINCHFIYNFLSSPIV
Hungary19A-6 GTLLMSFKLSIGKVAILDIP---------ATHNEAIISIFPYANKENIIRDYLMIFLPLI
. ** . .:*.:. * * *. :. : * :. * * :: *::
D39 QSVIEEKASGSTKQKELLTKTIKEYLIPLPPLPEQSRIVDKIEQFFAHIDALI-
Hungary19A-6 STLGDSK--DAIKGKTLNSTSISELLIPISNHEEMKRIISKVDLLFQKVSQLFE
.:: :.* .: * * * :.:*.* ***:. * .**:.*:: :* ::. *: