PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN000798000
• symbol^?: rnjA
• synonym:
• description^?: Ribonuclease J 1

  descriptions from strain specific annotations:

  • Ribonuclease J 1
  • metallo-beta-lactamase superfamily protein
  • ribonuclease J
  • metallo-beta-lactamase superfamily protein 1
  • metallo-beta-lactamase superfamily protein domain protein
  • Conserved hypothetical protein
  • Ribonuclease J1 (endonuclease and 5' exonuclease)
  • Predicted hydrolase of the metallo-beta-lactamase superfamily
• strand^?: -
• coordinates^?: 966395..968090
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS00620 (rnjA)
(2)
D39:
SPD_RS00715 (rnjA)
(2)
D39V:
SPV_RS00715 (rnjA)
(19A)
Hungary19A-6:
SPH_RS01135 (rnjA)
(19F)
EF3030:
EF3030_RS00680 (rnjA)
(6B)^?
670-6B:
SP670_RS01045 (rnjA)
(6A)
6A-10:
HKM25_RS00755 (rnjA)
(5)
70585:
SP70585_RS00975 (rnjA)
(19F)
A026:
T308_RS00595 (rnjA)
(3)
A66:
A66_RS00700 (rnjA)
(11A)
AP200:
SPAP_RS00885
(12F)
ASP0581:
EL334_RS00720 (rnjA)
(19F)
ATCC 49619:
EL263_RS00895 (rnjA)
(23F)
ATCC 700669:
SPN23F_RS00705 (rnjA)
(19F)
BM6001:
ODS73_RS01055 (rnjA)
(1)
BVJ1JL:
JN057_RS00905 (rnjA)
(14)
CGSP14:
SPCG_RS00685 (rnjA)
(19F)
G54:
SPG_RS00650
(1)
gamPNI0373:
HMPREF1038_RS00935 (rnjA)
(3)
HU-OH:
EL271_RS00685 (rnjA)
(19A)
Hu15:
SPNHU15_RS08235 (rnjA)
(19A)
Hu17:
SPNHU17_RS00865 (rnjA)
(1)
INV104:
INV104_RS00625 (rnjA)
(14)
INV200:
SPNINV200_RS00665 (rnjA)
(14)
JJA:
SPJ_RS00765 (rnjA)
(19F)
MDRSPN001:
MDRSPN_RS00710 (rnjA)
(1)
NCTC7465:
AT689_RS01770 (rnjA)
(2)
NCTC7466:
DQM66_RS00715 (rnjA)
(4)
NU83127:
EL277_RS00690 (rnjA)
(3)
OXC141:
SPNOXC_RS00935 (rnjA)
(1)
P1031:
SPP_RS00930 (rnjA)
(2)
R6:
SPR_RS00685 (rnjA)
(19A)
SP49:
BMJ42_RS01235 (rnjA)
(1)
SPN032672:
SPN032672_RS06910 (rnjA)
(3)
SPN034156:
SPN034156_RS06870 (rnjA)
(3)
SPN034183:
SPN034183_RS00940 (rnjA)
(3)
SPN994038:
SPN994038_RS00870 (rnjA)
(3)
SPN994039:
SPN994039_RS00865 (rnjA)
(3)
SPNA45:
SPNA45_RS10625
(19F)
ST556:
MYY_RS01070 (rnjA)
(19F)
Taiwan19F-14:
SPT_RS00860 (rnjA)
(19A)
TCH8431/19A:
HMPREF0837_RS02135 (rnjA)
(4)
Xen35:
CXP32_RS00635 (rnjA)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
  D39             MAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
  D39V            MAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
  Hungary19A-6    MAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
  EF3030          MAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
                  ************************************************************
  
  TIGR4           IVDNIDRVKAVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRNAKL
  D39             IVDNIDRVKAVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRNAKL
  D39V            IVDNIDRVKAVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRNAKL
  Hungary19A-6    IVDNIDRVKAVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRNAKL
  EF3030          IVDNIDRVKAVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRNAKL
                  ************************************************************
  
  TIGR4           YEINHNTELTFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLH
  D39             YEINHNTELTFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLH
  D39V            YEINHNTELTFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLH
  Hungary19A-6    YEINHNTELTFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLH
  EF3030          YEINHNTELTFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLH
                  ************************************************************
  
  TIGR4           RMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIQGIEGRIIFASFASNIFRLQ
  D39             RMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIQGIEGRIIFASFASNIFRLQ
  D39V            RMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIQGIEGRIIFASFASNIFRLQ
  Hungary19A-6    RMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIQGIEGRIIFASFASNIFRLQ
  EF3030          RMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIQGIEGRIIFASFASNIFRLQ
                  ************************************************************
  
  TIGR4           QATEAAVKTGRKIAVFGRSMEKAIVNGIDLGYIKAPKGTFIEPNEIKDYPAGEVLILCTG
  D39             QATEAAVKTGRKIAVFGRSMEKAIVNGIDLGYIKAPKGTFIEPNEIKDYPAGEVLILCTG
  D39V            QATEAAVKTGRKIAVFGRSMEKAIVNGIDLGYIKAPKGTFIEPNEIKDYPAGEVLILCTG
  Hungary19A-6    QATEAAVKTGRKIAVFGRSMEKAIVNGIDLGYIKAPKGTFIEPNEIKDYPAGEVLILCTG
  EF3030          QATEAAVKTGRKIAVFGRSMEKAIVNGIDLGYIKAPKGTFIEPNEIKDYPAGEVLILCTG
                  ************************************************************
  
  TIGR4           SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINIISEAGVEVIHGK
  D39             SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINIISEAGVEVIHGK
  D39V            SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINIISEAGVEVIHGK
  Hungary19A-6    SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINIISEAGVEVIHGK
  EF3030          SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINIISEAGVEVIHGK
                  ************************************************************
  
  TIGR4           VNNIHTSGHGGQQEQKLMLCLIKPKYFMPVHGEYRMQKVHAGLAVDTGVEKDNIFIMSNG
  D39             VNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKVHAGLAVDTGVEKDNIFIMSNG
  D39V            VNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKVHAGLAVDTGVEKDNIFIMSNG
  Hungary19A-6    VNNIHTSGHGGQQEQKLMLCLIKPKYFMPVHGEYRMQKVHAGLAVDTGVEKDNIFIMSNG
  EF3030          VNNIHTSGHGGQQEQKLMLCLIKPKYFMPVHGEYRMQKVHAGLAVDTGVEKDNIFIMSNG
                  ******************* ****************************************
  
  TIGR4           DVLALTADSARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFKSQM
  D39             DVLALTADSARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFKSQM
  D39V            DVLALTADSARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFKSQM
  Hungary19A-6    DVLALTADSARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFKSQM
  EF3030          DVLALTADSARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFKSQM
                  ************************************************************
  
  TIGR4           ILSGPDILSRGFVYMRESGDLIRQSQRILFNAIRIALKNKDASVQSVNGAIVNAIRPFLY
  D39             ILSGPDILSRGFVYMRESGDLIRQSQRILFNAIRIALKNKDASVQSVNGAIVNAIRPFLY
  D39V            ILSGPDILSRGFVYMRESGDLIRQSQRILFNAIRIALKNKDASVQSVNGAIVNAIRPFLY
  Hungary19A-6    ILSGPDILSRGFVYMRESGDLIRQSQRILFNAIRIALKNKDASVQSVNGAIVNAIRPFLY
  EF3030          ILSGPDILSRGFVYMRESGDLIRQSQRILFNAIRIALKNKDASVQSVNGAIVNAIRPFLY
                  ************************************************************
  
  TIGR4           ENTEREPIIIPMILTPDEE
  D39             ENTEREPIIIPMILTPDEE
  D39V            ENTEREPIIIPMILTPDEE
  Hungary19A-6    ENTEREPIIIPMILTPDEE
  EF3030          ENTEREPIIIPMILTPDEE
                  *******************