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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000805000
- symbol?: tsaD
- synonym:
- description?: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
- tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
- putative glycoprotease
- O-sialoglycoprotein endopeptidase (Glycoprotease)
- tRNA N6-adenosine threonylcarbamoyltransferase
- glycoprotease family protein
- O-sialoglycoprotein endopeptidase
- putative glycoprotease GCP
- metallohydrolase, glycoprotease/Kae1 family protein
- N(6)-L-threonylcarbamoyladenine synthase TsaD
- putative DNA-binding/iron metalloprotein/AP endonuclease
- Secreted metalloendopeptidase Gcp
- tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
- TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 970773..971783
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
SPN034183:
SPN034183_RS00975 (tsaD)
SPN994038:
SPN994038_RS00905 (tsaD)
SPN994039:
SPN994039_RS00900 (tsaD)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKDRYILAFETSCDETSVAVLKNDDELLSNVIASQIESHKRFGGVVPEVASRHHVEVITA
D39 MKDRYILAFETSCDETSVAVLKNDDELLSNVIASQIESHKRFGGVVPEVASRHHVEVITA
D39V MKDRYILAFETSCDETSVAVLKNDDELLSNVIASQIESHKRFGGVVPEVASRHHVEVITA
Hungary19A-6 MKDRYILAFETSCDETSVAVLKNDDELLSNVIASQIESHKRFGGVVPEVASRHHVEVITA
EF3030 MKDRYILAFETSCDETSVAVLKNDDELLSNVIASQIESHKRFGGVVPEVASRHHVEVITA
************************************************************
TIGR4 CIEEALAEAGITEEDVTAVAVTYGPGLVGALLVGLSAAKAFAWAHGLPLIPVNHMAGHLM
D39 CIEEALAEAGITEEDVTAVAVTYGPGLVGALLVGLSAAKAFAWAHGLPLIPVNHMAGHLM
D39V CIEEALAEAGITEEDVTAVAVTYGPGLVGALLVGLSAAKAFAWAHGLPLIPVNHMAGHLM
Hungary19A-6 CIEEALAEAGITEEDVTAVAVTYGPGLVGALLVGLSAAKTFAWAHGLPLIPVNHMAGHLM
EF3030 CIEEALAEAGITEEDVTAVAVTYGPGLVGALLVGLSAAKAFAWAHGLPLIPVNHMAGHLM
***************************************:********************
TIGR4 AAQSVEPLEFPLLALLVSGGHTELVYVSEAGDYKIVGETRDDAVGEAYDKVGRVMGLTYP
D39 AAQSVEPLEFPLLALLVSGGHTELVYVSEAGDYKIVGETRDDAVGEAYDKVGRVMGLTYP
D39V AAQSVEPLEFPLLALLVSGGHTELVYVSEAGDYKIVGETRDDAVGEAYDKVGRVMGLTYP
Hungary19A-6 AAQSVEPLEFPLLALLVSGGHTELVYVSEAGDYKIVGETRDDAVGEAYDKVGRVMGLTYP
EF3030 AAQSVEPLEFPLLALLVSGGHTELVYVSEAGDYKIVGETRDDAVGEAYDKVGRVMGLTYP
************************************************************
TIGR4 AGREIDELAHQGQDIYDFPRAMIKEDNLEFSFSGLKSAFINLHHNAEQKGESLSTEDLCA
D39 AGREIDELAHQGQDIYDFPRAMIKEDNLEFSFSGLKSAFINLHHNAEQKGESLSTEDLCA
D39V AGREIDELAHQGQDIYDFPRAMIKEDNLEFSFSGLKSAFINLHHNAEQKGESLSTEDLCA
Hungary19A-6 AGREIDELAHQGQDIYDFPRAMIKEDNLEFSFSGLKSAFINLHHNAEQKGESLSTEDLCA
EF3030 AGREIDELAHQGQDIYDFPRAMIKEDNLEFSFSGLKSAFINLHHNAEQKGESLSTEDLCA
************************************************************
TIGR4 SFQAAVMDILMAKTKKALEKYPVKILVVAGGVAANKGLRERLAAEITDVKVIIPPLRLCG
D39 SFQAAVMDILMAKTKKALEKYPVKTLVVAGGVAANKGLRERLATEITDVNVIIPPLRLCG
D39V SFQAAVMDILMAKTKKALEKYPVKTLVVAGGVAANKGLRERLATEITDVNVIIPPLRLCG
Hungary19A-6 SFQAAVMDILMAKTKKALEEYPVKTLVVAGGVAANKGLRERLAAEITDVKVIIPPLRLCG
EF3030 SFQAAVMDILMAKTKKALEKYPVKTLVVAGGVAANKGLRERLAAEITDVKVIIPPLRLCG
*******************:**** ******************:*****:**********
TIGR4 DNAGMIAYASVSEWNKENFAGWDLNAKPSLAFDTME
D39 DNAGMIAYASVSEWNKENFANLDLNAKPSLAFDTME
D39V DNAGMIAYASVSEWNKENFANLDLNAKPSLAFDTME
Hungary19A-6 DNAGMIAYASVSEWNKENFAGWDLNAKPSLAFDTME
EF3030 DNAGMIAYASVSEWNKENFAGWDLNAKPSLAFDTME
********************. **************