PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN000901000
• symbol^?: ribD
• synonym:
• description^?: bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD

  descriptions from strain specific annotations:

  • bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
  • riboflavin biosynthesis protein RibD
  • riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
  • bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
  • Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
  • Pyrimidine reductase, riboflavin biosynthesis
  • Riboflavin biosynthese; a deaminase
  • riboflavin biosynthesis protein
  • pseudogene
• strand^?: -
• coordinates^?: 1061030..1062134
• occurrence^?: in 98% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS00885 (ribD)
(2)
D39:
SPD_RS00940 (ribD)
(2)
D39V:
SPV_RS00940 (ribD)
(19A)
Hungary19A-6:
SPH_RS01355 (ribD)
(19F)
EF3030:
EF3030_RS00920 (ribD)
(6B)^?
670-6B:
SP670_RS01280 (ribD)
(6A)
6A-10:
HKM25_RS00960 (ribD)
(5)
70585:
SP70585_RS01185 (ribD)
(19F)
A026:
T308_RS00820 (ribD)
(3)
A66:
A66_RS00925 (ribD)
(11A)
AP200:
SPAP_RS01135 (ribD)
(12F)
ASP0581:
EL334_RS01005 (ribD)
(19F)
ATCC 49619:
EL263_RS01130 (ribD)
(23F)
ATCC 700669:
SPN23F_RS00925 (ribD)
(19F)
BM6001:
ODS73_RS01265 (ribD)
(1)
BVJ1JL:
JN057_RS01115 (ribD)
(14)
CGSP14:
SPCG_RS01035 (ribD)
(19F)
G54:
SPG_RS00880 (ribD)
(1)
gamPNI0373:
HMPREF1038_RS01175 (ribD)
(3)
HU-OH:
EL271_RS00925 (ribD)
(19A)
Hu15:
SPNHU15_RS01145 (ribD)
(19A)
Hu17:
SPNHU17_RS01075 (ribD)
(1)
INV104:
INV104_RS00905 (ribD)
(14)
INV200:
SPNINV200_RS00915 (ribD)
(14)
JJA:
SPJ_RS00980 (ribD)
(19F)
MDRSPN001:
—
(1)
NCTC7465:
AT689_RS01520 (ribD)
(2)
NCTC7466:
DQM66_RS00940 (ribD)
(4)
NU83127:
EL277_RS00980 (ribD)
(3)
OXC141:
SPNOXC_RS01165 (ribD)
(1)
P1031:
SPP_RS01170 (ribD)
(2)
R6:
SPR_RS00885 (ribD)
(19A)
SP49:
BMJ42_RS01500 (ribD)
(1)
SPN032672:
SPN032672_RS07190 (ribD)
(3)
SPN034156:
SPN034156_RS07085 (ribD)
(3)
SPN034183:
SPN034183_RS01170 (ribD)
(3)
SPN994038:
SPN994038_RS01100 (ribD)
(3)
SPN994039:
SPN994039_RS01095 (ribD)
(3)
SPNA45:
SPNA45_RS10290
(19F)
ST556:
MYY_RS01300 (ribD)
(19F)
Taiwan19F-14:
SPT_RS01090 (ribD)
(19A)
TCH8431/19A:
HMPREF0837_RS02355 (ribD)
(4)
Xen35:
CXP32_RS00920 (ribD)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MSDSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCR
  D39             MSDSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCR
  D39V            MSDSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCR
  Hungary19A-6    MSDSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCR
  EF3030          MSDSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCR
                  *****************************:******************************
  
  TIGR4           ESPVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL
  D39             ESPVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL
  D39V            ESPVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL
  Hungary19A-6    KSPVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL
  EF3030          KSPVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNL
                  :***********************************************************
  
  TIGR4           QVTVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHV
  D39             QVTVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHV
  D39V            QVTVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHV
  Hungary19A-6    QVTVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHV
  EF3030          QVTVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHV
                  ************************************************************
  
  TIGR4           HQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTHLRTPLTSKIVKTANDIKT
  D39             HQLRHYVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTHLRTPLTSKIVKTANDIKT
  D39V            HQLRHYVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTHLRTPLTSKIVKTANDIKT
  Hungary19A-6    HQLRHYVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTHLRTPLTSKIVKTANDIKT
  EF3030          HQLRHHVSAIMVGVNTVIQDDPLLTCRLEEGKNPIRIICDTHLRTPLTSKIVKTANDIKT
                  *****:******************************************************
  
  TIGR4           YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS
  D39             YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS
  D39V            YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS
  Hungary19A-6    YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS
  EF3030          YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS
                  ************************************************************
  
  TIGR4           ALEQQIVDELKIYIAPKVFGGSAKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVI
  D39             ALEQQIVDELKIYIAPKIFGGSAKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVI
  D39V            ALEQQIVDELKIYIAPKIFGGSAKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVI
  Hungary19A-6    ALEQQIVDELKIYIAPKIFGGSAKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVI
  EF3030          ALEQQIVDELKIYIAPKIFGGSAKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVI
                  *****************:******************************************
  
  TIGR4           YPCSQE
  D39             YPCSQE
  D39V            YPCSQE
  Hungary19A-6    YPCSQE
  EF3030          YPCSQE
                  ******