PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001306000
• symbol^?: dinP
• synonym: dinB
• description^?: DNA polymerase IV

  descriptions from strain specific annotations:

  • DNA polymerase IV
  • DNA polymerase IV (Pol IV)
  • DNA-damage inducible protein P
  • DNA-directed DNA polymerase
  • DNA polymerase IV DinB
  • IMS HHH motif family protein
  • Nucleotidyltransferase/DNA polymerase involved in DNA repair
• strand^?: -
• coordinates^?: 1633104..1634165
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS02260 (dinB)
(2)
D39:
SPD_RS02250 (dinB)
(2)
D39V:
SPV_RS02250 (dinB)
(19A)
Hungary19A-6:
SPH_RS02750 (dinB)
(19F)
EF3030:
EF3030_RS02250 (dinB)
(6B)^?
670-6B:
SP670_RS02670 (dinB)
(6A)
6A-10:
HKM25_RS02300 (dinB)
(5)
70585:
SP70585_RS02600 (dinB)
(19F)
A026:
T308_RS02220 (dinB)
(3)
A66:
A66_RS02195 (dinB)
(11A)
AP200:
SPAP_RS02330 (dinB)
(12F)
ASP0581:
EL334_RS02440 (dinB)
(19F)
ATCC 49619:
EL263_RS02435 (dinB)
(23F)
ATCC 700669:
SPN23F_RS02195 (dinB)
(19F)
BM6001:
ODS73_RS02675 (dinB)
(1)
BVJ1JL:
JN057_RS02395 (dinB)
(14)
CGSP14:
SPCG_RS02365 (dinB)
(19F)
G54:
SPG_RS02135 (dinB)
(1)
gamPNI0373:
HMPREF1038_RS02470 (dinB)
(3)
HU-OH:
EL271_RS02175 (dinB)
(19A)
Hu15:
SPNHU15_RS02495 (dinB)
(19A)
Hu17:
SPNHU17_RS02425 (dinB)
(1)
INV104:
INV104_RS02285 (dinB)
(14)
INV200:
SPNINV200_RS02225 (dinB)
(14)
JJA:
SPJ_RS02230 (dinB)
(19F)
MDRSPN001:
MDRSPN_RS02205 (dinB)
(1)
NCTC7465:
AT689_RS00235 (dinB)
(2)
NCTC7466:
DQM66_RS02250 (dinB)
(4)
NU83127:
EL277_RS02350 (dinB)
(3)
OXC141:
SPNOXC_RS02390 (dinB)
(1)
P1031:
SPP_RS02425 (dinB)
(2)
R6:
SPR_RS02115 (dinB)
(19A)
SP49:
BMJ42_RS02900 (dinB)
(1)
SPN032672:
SPN032672_RS08540 (dinB)
(3)
SPN034156:
SPN034156_RS08305 (dinB)
(3)
SPN034183:
SPN034183_RS02400 (dinB)
(3)
SPN994038:
SPN994038_RS02325 (dinB)
(3)
SPN994039:
SPN994039_RS02320 (dinB)
(3)
SPNA45:
SPNA45_RS08960 (dinB)
(19F)
ST556:
MYY_RS02690 (dinB)
(19F)
Taiwan19F-14:
SPT_RS02480 (dinB)
(19A)
TCH8431/19A:
HMPREF0837_RS03650 (dinB)
(4)
Xen35:
CXP32_RS02310 (dinB)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MLIFPLLNDLSRKIIHIDMDAFFAAVEIRDNPKLRGKPVIIGSDPRQTGGRGVVSTCSYE
  D39             MLIFPLLNDLSRKIIHIDMDAFFAAVEIKDNPKLRGKPVIIGSDPRQTGGRGVVSTCSYE
  D39V            MLIFPLLNDLSRKIIHIDMDAFFAAVEIKDNPKLRGKPVIIGSDPRQTGGRGVVSTCSYE
  Hungary19A-6    MLIFPLLNDLSRKIIHIDMDAFFAAVEIRDNPKLRGKSVIIGSDPRQTGGRGVVSTCSYE
  EF3030          MLIFPLLNDLSRKIIHIDMDAFFAAVEIRDNPKLRGKPVIIGSDPRQTGGRGVVSTCSYE
                  ****************************:********.**********************
  
  TIGR4           ARAFGVHSAMSSKEAYERCPQAVFISGNYEKYKSVGLQIRAIFKRYTDLIEPMSIDEAYL
  D39             ARAFGVHSAMSSKEAYERCPQAVFISGNYEKYKAVGLQIRAIFKRYTDLIEPMSIDEAYL
  D39V            ARAFGVHSAMSSKEAYERCPQAVFISGNYEKYKAVGLQIRAIFKRYTDLIEPMSIDEAYL
  Hungary19A-6    ARAFGVHSAMSSKEAYERCPQAVFISGNYEKYKAVGLQIRAIFKRYTDLIEPMSIDEAYL
  EF3030          ARAFGVHSAMSSKEAYERCPQAVFISGNYEKYKSVGLQIRAIFKRYTDLIEPMSIDEAYL
                  *********************************:**************************
  
  TIGR4           DVTENKLGIKSAVKIARLIQKDIWQELHLTASAGVSYNKFLAKMASDYQKPHGLTVILPE
  D39             DVTENKLGIKSAVKIARLIQKDIWQELHLTASAGISYNKFLAKMASDYQKPHGLTVILPE
  D39V            DVTENKLGIKSAVKIARLIQKDIWQELHLTASAGISYNKFLAKMASDYQKPHGLTVILPE
  Hungary19A-6    DVTENKLGIKSAVKIARLIQKDIWQELHLTASAGISYNKFLAKMASDYQKPHGLTVILPE
  EF3030          DVTENKLGIKSAVKIARLIQKDIWQELHLTASAGVSYNKFLAKMASDYQKPHGLTVILPE
                  **********************************:*************************
  
  TIGR4           QAEDFLKQMDISKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKAR
  D39             QAEDFLKQMDISKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKAR
  D39V            QAEDFLKQMDISKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKAR
  Hungary19A-6    QAEDFLKQMDISKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKAR
  EF3030          QAEDFLKQMDISKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKAR
                  ************************************************************
  
  TIGR4           GIHNSPVKSNRIRKSIGKEKTYGKILLAEEDIKKELTLLSEKVALNLHQQEKAGKIVILK
  D39             GIHNSPVKSNRIRKSIGKEKTYGKILRAEEDIKKELTLLSEKVALNLHQQEKAGKIVILK
  D39V            GIHNSPVKSNRIRKSIGKEKTYGKILRAEEDIKKELTLLSEKVALNLHQQEKAGKIVILK
  Hungary19A-6    GIHNSPVKSNRIRKSIGKEKTYGKILRAEEDIKKELTLLSEKVALNLHQQEKAGKIVILK
  EF3030          GIHNSPVKSNRIRKSIGKEKTYGKILLAEEDIKKELTLLSEKVALNLHQQEKAGKIVILK
                  ************************** *********************************
  
  TIGR4           IRYEDFSTLTKRKSLAQKTQDASQISQIALQLYEELSKKERGVRLLGITMTGF
  D39             IRYEDFSTLTKRKSIAQKTQDASQISQIALQLYEELSEKERGVRLLGITMTGF
  D39V            IRYEDFSTLTKRKSIAQKTQDASQISQIALQLYEELSEKERGVRLLGITMTGF
  Hungary19A-6    IRYEDFSTLTKRKSLAQKTQDASQISQIALQLYEELSEKERGVRLLGITMTGF
  EF3030          IRYEDFSTLTKRKSLAQKTQDASQISQIALQLYEELSEKERGVRLLGITLTGF
                  **************:**********************:***********:***