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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001335000
- symbol?: lacE-1
- synonym:
- description?: PTS lactose transporter subunit IIBC
- PTS lactose transporter subunit IIBC
- pts system lactose-specific eiicb component (eiicb-lac) (eii-lac)
- PTS system lactose-specific EIICB component
- PTS system, lactose-specific IIBC components
- pts system lactose-specific transporter subunit EIIBC
- Lactose-specific PTS IIBC components
- Phosphotransferase system cellobiose-specific component IIC
- Phosphotransferase system sugar-specific EII component
- PTS EIIC component
- PTS system, IIBC component
- pts system lactose-specific EIIBC
- PTS system lactose-specific transporter subunits IICB
- PTS transporter, IIB
- putative PTS system, lactose-specific IIC component
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1682046..1683731
- occurrence?: in 65% of 43 strains
⊟Orthologs[edit | edit source]
(14)
INV200:
—
(14)
JJA:
—
(19F)
MDRSPN001:
—
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MDKLVAAIEKQQGKFEKISTNNYMMAIKDGFIATMPLIMFSSFLMIIIMIPKNFGVELPS
D39 MDKLVAAIEKQQGKFEKISTNNYMMAIKDGFIATMPLIMFSSFLMIIIMIPKNFGVELPS
D39V MDKLVAAIEKQQGKFEKISTNNYMMAIKDGFIATMPLIMFSSFLMIIIMIPKNFGVELPS
Hungary19A-6 MDKLVAAIEKQQGKFEKISTNNYMMAIKDGFIATMPLIMFSSFLMIIIMIPKNFGVELPS
************************************************************
TIGR4 PAIVWMRKVYMLTMGVLGIIVSGTVGKSLVGNVNRKMPHGKVINDISAMLAAICSYLVLT
D39 PAIVWMRKVYMLTMGVLGIIVSGTVGKSLVGNVNRKMPHGKVINDISAMLAAICSYLVLT
D39V PAIVWMRKVYMLTMGVLGIIVSGTVGKSLVGNVNRKMPHGKVINDISAMLAAICSYLVLT
Hungary19A-6 PAIAWMRKVYMLTMGVLGVIVSGTVAKSLAGNVNRKMPPGKVINDTSAMLAAICGYLVLT
***.**************:******.***.******** ****** ********.*****
TIGR4 VTLVVDEKTGSTSLSTNYLGSQGLITSFVSAFITVNVYRFCIKRDITIHLPKEVPGAISQ
D39 VTLVVDEKTGSTSLSTNYLGSQGLITSFVSAFITVNVYRFCIKRDITIHLPKEVPGAISQ
D39V VTLVVDEKTGSTSLSTNYLGSQGLITSFVSAFITVNVYRFCIKRDITIHLPKEVPGAISQ
Hungary19A-6 VTLVVDEKTGSTSLSTNYLGSQGLITSFVSTFITVNVYRFCIKRDITIHLPKEVPGAISQ
******************************:*****************************
TIGR4 AFRDIFPFSFVLLISGLLDIVSRFSLDVPFAQVFQQLLTPIFKGAESYPAMMLIWFMCAL
D39 AFRDIFPFSFVLLISGLLDIVSRFSLDVPFAQVFQQLLTPIFKGAESYPAMMLIWFMCAL
D39V AFRDIFPFSFVLLISGLLDIVSRFSLDVPFAQVFQQLLTPIFKGAESYPAMMLIWFMCAL
Hungary19A-6 AFRDIFPFSFVLLISGLLDIVSRFSLDVPFAQVFQQLLTPIFKGAESYPAMMLIWFMCAL
************************************************************
TIGR4 LWFVGIHGPSIVLPAVTALQLSNMEENAQLLANGQFPYHSLTPNFGNYIAAIGGTGATFV
D39 LWFVGIHGPSIVLPAVTALQLSNMEENAQLLANGQFPYHSLTPNFGNYIAAIGGTGATFV
D39V LWFVGIHGPSIVLPAVTALQLSNMEENAQLLANGQFPYHSLTPNFGNYIAAIGGTGATFV
Hungary19A-6 LWFVGIHGPSIVLPAVTALQLSNMEENAQLLANGQFPYHSLTPNFGNYIAAIGGTGATFV
************************************************************
TIGR4 VPFILIFFMRSKQLKSVGKATITPVLFAVNEPLLFGMPVILNPYLFVPFLMTPPVNVFLG
D39 VPFILIFFMRSKQLKSVGKATITPVLFAVNEPLLFGMPVILNPYLFVPFLMTPPVNVFLG
D39V VPFILIFFMRSKQLKSVGKATITPVLFAVNEPLLFGMPVILNPYLFVPFLMTPPVNVFLG
Hungary19A-6 VPFILIFFMRSKQLKSVGKATITPVLFAVNEPLLFGMPVILNPYLFVPFLMTPPVNVFLG
************************************************************
TIGR4 KVFIDFFGMNGFYIQLPWTFPGPLGLLIGTNFQLISFVFLSLILVVDILIYLPFCRAYDR
D39 KVFIDFFGMNGFYIQLPWAFPGPLGLLIGTNFQPISFVLLSLMLVVDILIYLPFCRAYDR
D39V KVFIDFFGMNGFYIQLPWAFPGPLGLLIGTNFQPISFVLLSLMLVVDILIYLPFCRAYDR
Hungary19A-6 KVFIDFFGMNGFYIQLPWAFPGPLGLLIGTNFQSISFVFLSLILVVDILIYLPFCRAYDR
******************:************** ****:***:*****************
TIGR4 QLLVKEDIASSNDIILEEDTSEIIPGEIDEIKSKELKVLVLCAGSGTSAQLANAINEGAN
D39 QLLMKEDVASSNGIILEEDTSEIMPGEIDVIKSKELKVLVLCAGSGTSAQLANAINEGAQ
D39V QLLMKEDVASSNGIILEEDTSEIMPGEIDVIKSKELKVLVLCAGSGTSAQLANAINEGAQ
Hungary19A-6 QLLMKEDVASSNDIILEEETSEIMPGELDEIKSKELKVLVLCAGSGTSAQLANAINEGAQ
***:***:****.*****:****:***:* *****************************:
TIGR4 LTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIH
D39 LAEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIH
D39V LAEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIH
Hungary19A-6 LAEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIH
*:**********************************************************
TIGR4 LTKSPSKALQFVLEHYQAV
D39 LTKNPSKSLQFVLEHYQAV
D39V LTKNPSKSLQFVLEHYQAV
Hungary19A-6 LTKSPSKSLQFVLEHYQAV
***.***:***********