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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 24-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_RS02855 [old locus tag: SPH_0590 ]
  • pan locus tag?: PNEUPAN001335000
  • symbol: SPH_RS02855
  • pan gene symbol?: lacE-1
  • synonym:
  • product: PTS lactose transporter subunit IIBC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_RS02855 [old locus tag: SPH_0590 ]
  • symbol: SPH_RS02855
  • product: PTS lactose transporter subunit IIBC
  • replicon: chromosome
  • strand: +
  • coordinates: 538389..540068
  • length: 1680
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGATAAGTTAGTCGCTGCCATTGAAAAGCAACAAGGGAAATTTGAAAAAATTTCTACT
    AATAATTATATGATGGCTATTAAAGATGGATTTATTGCTACTATGCCTTTAATTATGTTT
    TCAAGCTTTTTGATGATTATTATTATGATTCCTAAAAATTTCGGAGTAGAGTTACCGAGT
    CCAGCTATTGCCTGGATGAGGAAAGTGTATATGCTAACCATGGGAGTTTTGGGTGTTATT
    GTTTCAGGGACAGTTGCAAAGTCATTGGCTGGAAATGTTAATAGAAAAATGCCTCCTGGA
    AAGGTAATAAATGATACTTCTGCAATGTTGGCGGCCATATGTGGCTATCTTGTATTAACT
    GTAACGCTTGTAGTTGATGAGAAAACGGGATCTACAAGTTTGTCGACAAACTATTTAGGA
    TCTCAAGGATTGATAACTTCGTTTGTCAGTACCTTTATTACTGTAAATGTTTACCGATTC
    TGTATTAAGCGAGACATTACTATTCATTTACCTAAGGAAGTTCCTGGGGCTATATCACAA
    GCTTTTAGAGATATTTTTCCTTTTTCTTTTGTTTTACTTATTAGTGGTTTGTTAGATATT
    GTATCTCGGTTTAGTTTAGATGTTCCTTTTGCCCAAGTATTTCAACAACTATTGACTCCT
    ATTTTTAAGGGGGCAGAATCATATCCTGCTATGATGTTGATTTGGTTTATGTGCGCTTTG
    CTTTGGTTTGTTGGAATTCATGGACCATCTATTGTCTTACCTGCTGTTACAGCTTTACAA
    CTGAGCAATATGGAAGAGAATGCTCAACTTCTTGCAAATGGGCAGTTTCCTTATCATTCT
    TTAACGCCTAATTTCGGAAATTATATCGCTGCTATCGGAGGAACGGGGGCTACCTTTGTT
    GTACCATTTATTTTGATTTTCTTTATGCGGTCTAAACAATTAAAATCGGTAGGTAAAGCT
    ACAATTACTCCTGTTTTATTTGCGGTGAATGAACCTCTTCTATTTGGTATGCCAGTTATT
    TTGAATCCCTATCTTTTTGTACCTTTTTTGATGACTCCACCAGTGAATGTATTTCTAGGA
    AAGGTCTTTATTGATTTCTTCGGAATGAATGGATTTTATATCCAGTTACCTTGGGCCTTT
    CCTGGTCCCTTGGGATTGTTAATTGGAACGAATTTTCAATCTATCTCCTTTGTATTTTTA
    TCTTTGATTTTAGTTGTCGACATATTGATTTATTTGCCATTCTGTAGAGCGTATGATAGA
    CAGTTACTGATGAAAGAAGATGTTGCAAGCTCAAATGATATTATTTTAGAGGAGGAGACA
    AGTGAAATAATGCCTGGTGAGTTAGATGAAATAAAAAGTAAGGAGTTGAAAGTACTGGTT
    CTTTGTGCAGGGTCTGGAACAAGTGCGCAATTAGCCAATGCAATTAACGAGGGCGCTCAA
    TTAGCAGAAGTTAGAGTGATTGCGAATTCAGGAGCGTACGGAGCTCATTATGATATTATG
    GGTGTTTATGATTTAATTATTCTGGCTCCACAAGTTCGGAGTTATTATAGAGAGATGAAG
    GTGGATGCAGAAAGATTAGGTATTCAGATAGTTGCTACCAGAGGAATGGAATATATTCAT
    TTAACAAAGAGTCCAAGTAAATCCTTACAATTTGTATTGGAGCATTACCAAGCTGTGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_RS02855 [old locus tag: SPH_0590 ]
  • symbol: SPH_RS02855
  • description: PTS lactose transporter subunit IIBC
  • length: 559
  • theoretical pI: 7.09732
  • theoretical MW: 61642.6
  • GRAVY: 0.553846

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, lactose-specific IIC component (TIGR00394; EC 2.7.1.69; HMM-score: 454.6)
    Signal transduction Signal transduction PTS PTS system, lactose-specific IIC component (TIGR00394; EC 2.7.1.69; HMM-score: 454.6)
    and 6 more
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, cellobiose-specific IIC component (TIGR00359; EC 2.7.1.69; HMM-score: 224.5)
    Signal transduction Signal transduction PTS PTS system, cellobiose-specific IIC component (TIGR00359; EC 2.7.1.69; HMM-score: 224.5)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, lactose/cellobiose family IIC component (TIGR00410; EC 2.7.1.69; HMM-score: 224.5)
    Signal transduction Signal transduction PTS PTS system, lactose/cellobiose family IIC component (TIGR00410; EC 2.7.1.69; HMM-score: 224.5)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, lactose/cellobiose family IIB component (TIGR00853; HMM-score: 92.4)
    Signal transduction Signal transduction PTS PTS system, lactose/cellobiose family IIB component (TIGR00853; HMM-score: 92.4)
  • TheSEED: see SPH_0590
  • PFAM:
    PTS_EIIC (CL0493) PTS_EIIC; Phosphotransferase system, EIIC (PF02378; HMM-score: 220)
    and 3 more
    Phosphatase (CL0031) PTS_IIB; PTS system, Lactose/Cellobiose specific IIB subunit (PF02302; HMM-score: 40.1)
    NADP_Rossmann (CL0063) Semialdhyde_dh; Semialdehyde dehydrogenase, NAD binding domain (PF01118; HMM-score: 13.2)
    no clan defined DUF3311; Protein of unknown function (DUF3311) (PF11755; HMM-score: 6.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9994
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0006
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003518
    • TAT(Tat/SPI): 0.000142
    • LIPO(Sec/SPII): 0.001233
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDKLVAAIEKQQGKFEKISTNNYMMAIKDGFIATMPLIMFSSFLMIIIMIPKNFGVELPSPAIAWMRKVYMLTMGVLGVIVSGTVAKSLAGNVNRKMPPGKVINDTSAMLAAICGYLVLTVTLVVDEKTGSTSLSTNYLGSQGLITSFVSTFITVNVYRFCIKRDITIHLPKEVPGAISQAFRDIFPFSFVLLISGLLDIVSRFSLDVPFAQVFQQLLTPIFKGAESYPAMMLIWFMCALLWFVGIHGPSIVLPAVTALQLSNMEENAQLLANGQFPYHSLTPNFGNYIAAIGGTGATFVVPFILIFFMRSKQLKSVGKATITPVLFAVNEPLLFGMPVILNPYLFVPFLMTPPVNVFLGKVFIDFFGMNGFYIQLPWAFPGPLGLLIGTNFQSISFVFLSLILVVDILIYLPFCRAYDRQLLMKEDVASSNDIILEEETSEIMPGELDEIKSKELKVLVLCAGSGTSAQLANAINEGAQLAEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKSLQFVLEHYQAV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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