PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001487000
• symbol^?: cysS
• synonym:
• description^?: cysteine--tRNA ligase

  descriptions from strain specific annotations:

  • cysteine--tRNA ligase
  • cysteinyl-tRNA synthetase
  • cysteinyl-tRNA synthease
• strand^?: +
• coordinates^?: 1905826..1907169
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS02925 (cysS)
(2)
D39:
SPD_RS02775 (cysS)
(2)
D39V:
SPV_RS02770 (cysS)
(19A)
Hungary19A-6:
SPH_RS03350 (cysS)
(19F)
EF3030:
EF3030_RS02805 (cysS)
(6B)^?
670-6B:
SP670_RS03270 (cysS)
(6A)
6A-10:
HKM25_RS02840 (cysS)
(5)
70585:
SP70585_RS03230 (cysS)
(19F)
A026:
T308_RS02840 (cysS)
(3)
A66:
A66_RS02695 (cysS)
(11A)
AP200:
SPAP_RS02890 (cysS)
(12F)
ASP0581:
EL334_RS03010 (cysS)
(19F)
ATCC 49619:
EL263_RS02950 (cysS)
(23F)
ATCC 700669:
SPN23F_RS02735 (cysS)
(19F)
BM6001:
ODS73_RS03230 (cysS)
(1)
BVJ1JL:
JN057_RS02930 (cysS)
(14)
CGSP14:
SPCG_RS02935 (cysS)
(19F)
G54:
SPG_RS02720 (cysS)
(1)
gamPNI0373:
HMPREF1038_RS03045 (cysS)
(3)
HU-OH:
EL271_RS02730 (cysS)
(19A)
Hu15:
SPNHU15_RS03030 (cysS)
(19A)
Hu17:
SPNHU17_RS02960 (cysS)
(1)
INV104:
INV104_RS02895 (cysS)
(14)
INV200:
SPNINV200_RS02805 (cysS)
(14)
JJA:
SPJ_RS02740 (cysS)
(19F)
MDRSPN001:
MDRSPN_RS07615 (cysS)
(1)
NCTC7465:
AT689_RS10760 (cysS)
(2)
NCTC7466:
DQM66_RS02775 (cysS)
(4)
NU83127:
EL277_RS02995 (cysS)
(3)
OXC141:
SPNOXC_RS02925 (cysS)
(1)
P1031:
SPP_RS03005 (cysS)
(2)
R6:
SPR_RS02630 (cysS)
(19A)
SP49:
BMJ42_RS03485 (cysS)
(1)
SPN032672:
SPN032672_RS09165 (cysS)
(3)
SPN034156:
SPN034156_RS08850 (cysS)
(3)
SPN034183:
SPN034183_RS02940 (cysS)
(3)
SPN994038:
SPN994038_RS02860 (cysS)
(3)
SPN994039:
SPN994039_RS02860 (cysS)
(3)
SPNA45:
SPNA45_RS08455 (cysS)
(19F)
ST556:
MYY_RS03315 (cysS)
(19F)
Taiwan19F-14:
SPT_RS03095 (cysS)
(19A)
TCH8431/19A:
HMPREF0837_RS04265 (cysS)
(4)
Xen35:
CXP32_RS02985 (cysS)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MIKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK
  D39             MIKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK
  D39V            MIKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK
  Hungary19A-6    MIKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE
  EF3030          MIKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK
                  **********************:************************************:
  
  TIGR4           VAYISNFTDVDDKIINRAREEGITPQEVADKYIAAFREDVTALGVKPATRHPRVVEFMAD
  D39             VAYISNFTDVDDKIINRAREEGITPQEVADKYIAAFREDVTALGVKPATRHPRVVEFMAD
  D39V            VAYISNFTDVDDKIINRAREEGITPQEVADKYIAAFREDVTALGVKPATRHPRVVEFMAD
  Hungary19A-6    VAYISNFTDVDDKIINRAKEEGITPQEVADKYIAAFREDVTALGVKPATRHPRVVEFMDD
  EF3030          VAYISNFTDVDDKIINRAREEGITPQEVADKYIAAFREDVTALGVKPATRHPRVVEFMAD
                  ******************:*************************************** *
  
  TIGR4           IIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEETARKENP
  D39             IIRFVEDLIERGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEETARKENP
  D39V            IIRFVEDLIERGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEETARKENP
  Hungary19A-6    IIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEETARKENP
  EF3030          IIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEETARKENP
                  **********:*************************************************
  
  TIGR4           VDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTNE
  D39             VDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTNE
  D39V            VDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTNE
  Hungary19A-6    VDFALWKSAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTNE
  EF3030          VDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTNE
                  ********:***************************************************
  
  TIGR4           IAQSEAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTLDGQVLRFFFATQHY
  D39             IAQSEAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTLDGQVLRFFFATQHY
  D39V            IAQSEAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTLDGQVLRFFFATQHY
  Hungary19A-6    IAQSEAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTLDGQVLRFFFATQHY
  EF3030          IAQSEAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTLDGQVLRFFFATQHY
                  ************************************************************
  
  TIGR4           RKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKFVAAMDEDFNAANGIT
  D39             RKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKFVAAMDEDFNAANGIT
  D39V            RKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKFVAAMDEDFNAANGIT
  Hungary19A-6    RKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKFVAAMDEDFNAANGIT
  EF3030          RKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKFVAAMDEDFNAANGIT
                  ************************************************************
  
  TIGR4           VVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAEIEDLIQKRQEARANRDFAT
  D39             VVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAEIEDLIQKRQEARANRDFET
  D39V            VVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAEIEDLIQKRQEARANRDFET
  Hungary19A-6    VVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAEIEDLIQKRQEARANRDFAT
  EF3030          VVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDADIEDLIQKRQEARANRDFAT
                  ****************************************:***************** *
  
  TIGR4           ADQIRDQLVTQGIKLLDTKDGVRWTRD
  D39             ADQIRDQLVTQGIKLLDTKDGVRWTRD
  D39V            ADQIRDQLVTQGIKLLDTKDGVRWTRD
  Hungary19A-6    ADQIRDQLVTQGIKLLDTKDGVRWTRD
  EF3030          ADQIRDQLVTQGIKLLDTKDGVRWTRD
                  ***************************