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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001642000
- symbol?: ykoD
- synonym:
- description?: ATP-binding cassette domain-containing protein
- ATP-binding cassette domain-containing protein
- ABC transporter ATP-binding protein - cobalt or other cation transport
- putative ABC transporter, ATP-binding protein
- ABC transporter, ATP-binding protein
- ABC transporter ATP-binding protein
- cobalt or other cation ABC transporter ATP-binding protein
- Putative HMP/thiamine import ATP-binding protein
- sugar ABC transporter ATP-binding protein
- ABC-type cobalt transport system, ATPase component
- ATPase component YkoD
- Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
- energy-coupling factor ABC transporter ATP-binding protein
- heme ABC exporter, ATP-binding protein CcmA
- putative ABC transporter, ATP-binding protein (pseudogene)
- Putative HMP/thiamine import ATP-binding protein YkoD
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2086881..2088266
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MGLELRAIQSPIFSEPFDFTFHAQAFTLLVGSSGSGKSSLFQMIAQVSSLPYSGQVLIDG
D39 MGLELRAIQSPIFSEPFDFTFHAQAFTLLVGSSGSGKSSLFQVIAQVSSLPYSGQVLIDG
D39V MGLELRAIQSPIFSEPFDFTFHAQAFTLLVGSSGSGKSSLFQVIAQVSSLPYSGQVLIDG
Hungary19A-6 MGLELRAIQSPIFSEPFDFTFHAQAFTLLVGSNGSGKSSLFQMIAQVSSLPYSGQVLIDG
EF3030 MGLELRAIQSPIFSEPFDFTFHAQAFTLLVGSSGSGKSSLFQVIAQVSSLPYSGQVLIDG
********************************.*********:*****************
TIGR4 SEVSQLSIVERVQTVGILLQNPNHQFTMESLFEELVFTMENIGYHLQEIDSKIAEVVQQC
D39 SEVSQLSIIARVQKVGILFQNPNHQFTMENLFEELIFTLENIGYHLQEIDSKIAEVVQQC
D39V SEVSQLSIIARVQKVGILFQNPNHQFTMENLFEELIFTLENIGYHLQEIDSKIAEVVQQC
Hungary19A-6 SEVSQLSIIARVQKVGILLQNPNHQFTMENLFEELIFTLENIGYHLQEIDSKIAEVVQQC
EF3030 SEVSQLSIIARVQKVGILFQNPNHQFTMENLFEELIFTLENIGYHLQEIDSKIAEVVQQC
********: ***.****:**********.*****:**:*********************
TIGR4 RCKDILHRLIHHLSGGEKQKAALAVLFAMNPRVYLLDEPFASIDRKSRIEILEILKELVY
D39 RCEAILHRPIHHLSGGEKQKAAMAVLFAMNPRVYLLDEPFASIDRKSRIEILEILKELAL
D39V RCEAILHRPIHHLSGGEKQKAAMAVLFAMNPRVYLLDEPFASIDRKSRIEILEILKELAL
Hungary19A-6 RCEAILHRPIHHLSGGEKQKAALAVLFAMNPRVYLLDEPFASIDRKSRIEILEILKELAL
EF3030 RCEAILHRPIHHLSGGEKQKAALAVLFAMNPRVYLLDEPFASIDRKSRIEILEILKELAL
**: **** *************:***********************************.
TIGR4 DGKTVILCDHDLSDYKAYIDHMVELRDGKLREVFQIPSYEMTQVASKEVASSPELFHMNR
D39 DGKTVILCDHDLSDYKAYIDHMVELRDGKLREVFQIPSYEMTQVASKEVASSPELFHMDR
D39V DGKTVILCDHDLSDYKAYIDHMVELRDGKLREVFQIPSYEMTQVASKEVASSPELFHMDR
Hungary19A-6 DGKTVILCDHDLSDYKAYIDYMVELRDGKLREVFQIPSYEMTQVASKEVAASPELFHMNR
EF3030 DGKTVILCDHDLSDYKAYIDHMVELRDGKLREVFQIPSYEMTQVASKEVASSPELFHMNR
********************:*****************************:*******:*
TIGR4 VTGELGNRPLFSIADFTFYQGISCILGDNGVGKSTLFRSILQFQKYKGSITWKGSVLKKK
D39 TTCEFGNRSLFSIADFTFYQGISCILGDNGVGKSTLFRSILQFQKYKGRIAWKGTVLKKK
D39V TTCEFGNRSLFSIADFTFYQGISCILGDNGVGKSTLFRSILQFQKYKGRIAWKGTVLKKK
Hungary19A-6 VTGELGNRPLFSIADFTFYQGISCILGDNGVGKSTLFRSILQFQKYKGRIAWKGTVLKKK
EF3030 VTGELGNRPLFSIADFTFYQGISCILGDNGVGKSTLFRSILQFQKYKGRIAWKGTVLKKK
.* *:***.*************************************** *:***:*****
TIGR4 KSLYRDLTGVVQEAEKQFIRVSLREELQLDGPDSERNQRIFQALRYFDLEQAVDKSPYQL
D39 KSLYRELTSIVQEAEKQFIRVSLREELQLDGPDSERNQRIFQALRYFDLEQAVDKSPYQL
D39V KSLYRELTSIVQEAEKQFIRVSLREELQLDGPDSERNQRIFQALRYFDLEQAVDKSPYQL
Hungary19A-6 KSLYRDLTGVVQEAEKQFIRVSLREELQLDGPDSERNQRIFQALRYFDLEQAVDKSPYQL
EF3030 KSLYRDLTGVVQEAEKQFIRVSLREELQLDGPDSERNQRIFQALRYFDLEQAVDKSPYQL
*****:**.:**************************************************
TIGR4 SGGQQKILQLLTILTSKASVILLDEPFAGLDDRACHYFCKWIVEERNQGRSFLLISHRLD
D39 SGGQQKILQLLTILTSKASVILLDEPFAGLDDRACHYFCKWIVEERNQGRSFLLISHRLD
D39V SGGQQKILQLLTILTSKASVILLDEPFAGLDDRACHYFCKWIVEERNQGRSFLLISHRLD
Hungary19A-6 SGGQQKILQLLTILTSKASVILLDEPFAGLDDRACHYFCKWIVEERNQGRSFLLISHRLD
EF3030 SGGQQKILQLLTILTSKASVILLDEPFAGLDDRACHYFCKWIVEERNQGRSFLLISHRLD
************************************************************
TIGR4 PLISVVDYWIEMTSQGLRHVKEVTITKPLTSQSSNTQGEVR
D39 PLISVVDYWIEMTSQGLRHVKEVTITKPLTSQSSNTQGEVR
D39V PLISVVDYWIEMTSQGLRHVKEVTITKPLTSQSSNTQGEVR
Hungary19A-6 PLISVVDYWIEMTSQGLRHVKEVTITKPLTSQSSNTQGEVR
EF3030 PLISVVDYWIEMTSQGLRHVKEVTITKPLTSQSSNTQGEVR
*****************************************