PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001696000
• symbol^?: prfB
• synonym:
• description^?: Peptide chain release factor 2

  descriptions from strain specific annotations:

  • Peptide chain release factor 2
  • peptide chain release factor 2, programmed frameshift
  • Peptide chain release factor 2; programmed frameshift-containing
  • Protein chain release factor B
• strand^?: +
• coordinates^?: 2136354..2137449
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS03695 (prfB)
(2)
D39:
SPD_RS03540 (prfB)
(2)
D39V:
SPV_RS03535 (prfB)
(19A)
Hungary19A-6:
SPH_RS04130 (prfB)
(19F)
EF3030:
EF3030_RS03550 (prfB)
(6B)^?
670-6B:
SP670_RS07775 (prfB)
(6A)
6A-10:
HKM25_RS03555 (prfB)
(5)
70585:
SP70585_RS03940 (prfB)
(19F)
A026:
T308_RS03570 (prfB)
(3)
A66:
A66_RS03425 (prfB)
(11A)
AP200:
SPAP_RS03625 (prfB)
(12F)
ASP0581:
EL334_RS03720 (prfB)
(19F)
ATCC 49619:
EL263_RS03735 (prfB)
(23F)
ATCC 700669:
SPN23F_RS03460 (prfB)
(19F)
BM6001:
ODS73_RS03965 (prfB)
(1)
BVJ1JL:
JN057_RS03660 (prfB)
(14)
CGSP14:
SPCG_RS03680 (prfB)
(19F)
G54:
SPG_RS03465 (prfB)
(1)
gamPNI0373:
HMPREF1038_RS03775 (prfB)
(3)
HU-OH:
EL271_RS03465 (prfB)
(19A)
Hu15:
SPNHU15_RS03770 (prfB)
(19A)
Hu17:
SPNHU17_RS03710 (prfB)
(1)
INV104:
INV104_RS03670 (prfB)
(14)
INV200:
SPNINV200_RS03560 (prfB)
(14)
JJA:
SPJ_RS03465 (prfB)
(19F)
MDRSPN001:
MDRSPN_RS03165 (prfB)
(1)
NCTC7465:
AT689_RS10035 (prfB)
(2)
NCTC7466:
DQM66_RS03540 (prfB)
(4)
NU83127:
EL277_RS03785 (prfB)
(3)
OXC141:
SPNOXC_RS03650 (prfB)
(1)
P1031:
SPP_RS03725 (prfB)
(2)
R6:
SPR_RS03340 (prfB)
(19A)
SP49:
BMJ42_RS04315 (prfB)
(1)
SPN032672:
SPN032672_RS09925 (prfB)
(3)
SPN034156:
SPN034156_RS09575 (prfB)
(3)
SPN034183:
SPN034183_RS03665 (prfB)
(3)
SPN994038:
SPN994038_RS03585 (prfB)
(3)
SPN994039:
SPN994039_RS03585 (prfB)
(3)
SPNA45:
SPNA45_RS06080 (prfB)
(19F)
ST556:
MYY_RS04045 (prfB)
(19F)
Taiwan19F-14:
SPT_RS03830 (prfB)
(19A)
TCH8431/19A:
HMPREF0837_RS04995 (prfB)
(4)
Xen35:
CXP32_RS03755 (prfB)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MDISVIRQKIDANREKLASFRGSLDLEGLEEEIAILENKMTEPDFWNDNIAAQKTSQELN
  D39             MDISVIRQKIDANREKLASFRGSLDLEGLEEEIAILENKMTEPDFWNDNIAAQKMSQELN
  D39V            MDISVIRQKIDANREKLAYFRGSLDLEGLEEEIAILENKMTEPDFWNDNIAAQKMSQELN
  Hungary19A-6    MDISVIRQKIDANREKLASFRGSLDLEGLEEEIAILENKMTEPDFWNDNIAAQKTSQELN
  EF3030          MDISVIRQKIDANREKLASFRGSLDLEGLEEEIAILENKMTEPDFWNDNIAAQKMSQELN
                  ****************** *********************************** *****
  
  TIGR4           ELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDELVAQLAELDKIMTSYEMTLLLSEPY
  D39             ELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDELVAQLAELDKIMTSYEMTLLLSEPY
  D39V            ELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDELVAQLAELDKIMTSYEMTLLLSEPY
  Hungary19A-6    ELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDELVAQLAELDKIMTSYEMTLLLSEPY
  EF3030          ELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDELVAQLAELDKIMTSYEMTLLLSEPY
                  ************************************************************
  
  TIGR4           DHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSF
  D39             DHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSF
  D39V            DHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSF
  Hungary19A-6    DHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSF
  EF3030          DHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSF
                  ************************************************************
  
  TIGR4           EGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVEVMPELDDTIEVEIREDDIKMDT
  D39             EGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVEVMPELDDTIEVEIREDDIKMDT
  D39V            EGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVEVMPELDDTIEVEIREDDIKMDT
  Hungary19A-6    EGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVEVMPELDDTIEVEIREDDIKMDT
  EF3030          EGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVEVMPELDDTIEVEIREDDIKMDT
                  ************************************************************
  
  TIGR4           FRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQDKK
  D39             FRSGGAGGQNVNKVSTGVRLTYIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQEKK
  D39V            FRSGGAGGQNVNKVSTGVRLTYIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQEKK
  Hungary19A-6    FRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQEKK
  EF3030          FRSGGAGGQNVNKVSTGVRLTYIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQEKK
                  *********************:***********************************:**
  
  TIGR4           AAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLK
  D39             AAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLK
  D39V            AAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLK
  Hungary19A-6    AAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLK
  EF3030          AAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLK
                  ************************************************************
  
  TIGR4           WRIS
  D39             WRIS
  D39V            WRIS
  Hungary19A-6    WRIS
  EF3030          WRIS
                  ****