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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001707000
- symbol?: rlmN
- synonym:
- description?: 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
- 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
- radical SAM enzyme, Cfr family
- Radical SAM protein
- 50S rRNA methyltransferase
- putative dual-specificity RNA methyltransferase
- putative dual-specificity RNA methyltransferase RlmN
- ribosomal RNA large subunit methyltransferase N
- 23S rRNA m2A2503 methyltransferase
- conserved hypothetical protein
- radical SAM enzyme, Cfr family protein
- Bifunctional 23S rRNA (adenine(2503)-C(2))-methyltransferase/tRNA (adenine(37)-C(2))-methyltransferase
- Predicted Fe-S-cluster redox enzyme
- radical SAM superfamily protein
- Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
- SAM-dependent methyltransferase
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2150776..2151536
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS03780 (rlmN)
(19F)
ATCC 49619:
EL263_RS03795 (rlmN)
(23F)
ATCC 700669:
SPN23F_RS03515 (rlmN)
(14)
INV200:
SPNINV200_RS03615 (rlmN)
(14)
JJA:
SPJ_RS03520 (rlmN)
(19F)
MDRSPN001:
MDRSPN_RS03230 (rlmN)
(19A)
SP49:
BMJ42_RS04375 (rlmN)
(1)
SPN032672:
SPN032672_RS09985 (rlmN)
(3)
SPN034156:
SPN034156_RS09630 (rlmN)
(3)
SPN034183:
SPN034183_RS03720 (rlmN)
(3)
SPN994038:
SPN994038_RS03640 (rlmN)
(3)
SPN994039:
SPN994039_RS03640 (rlmN)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKPSIHSLVHQTMQEWVLEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQF
D39 MKPSIHSLAHQTMQEWVLEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQF
D39V MKPSIHSLAHQTMQEWVLEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQF
Hungary19A-6 MKPSIHSLTHQTMQEWVLEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQF
EF3030 MKPSIHSLPHQTMQEWVLEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQF
******** ***************************************************
TIGR4 VVNPLKQRIVQESADGTVKYLFELPDGMLIETVLMRQHYGLSVCVTTQVGCNIGCTFCAS
D39 VVNPLKQRIVQESADGTVKYLFELPDGMLIETVLMRQHYGLSVCVTTQVDCNIGCTFCAS
D39V VVNPLKQRIVQESADGTVKYLFELPDGMLIETVLMRQHYGLSVCVTTQVDCNIGCTFCAS
Hungary19A-6 VVNPLKQRIVQESADGTVKYLFELPDGMLIETVLMRQHYGLSVCVTTQVGCNIGCTFCAS
EF3030 VVNPLKQRIVQESADGTVKYLFELPDGMLIETVLMRQHYGLSVCVTTQVGCNIGCTFCAS
*************************************************.**********
TIGR4 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERISHIVVMGIGEPFDNYNNVLNFFRTIN
D39 DLIKKQRDLNNGEIVAQIMLVQKYFAERGQDERVSHIVVMGIGEPFDNYNNVLNFVCTIN
D39V DLIKKQRDLNNGEIVAQIMLVQKYFAERGQDERVSHIVVMGIGEPFDNYNNVLNFVCTIN
Hungary19A-6 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFFRTIN
EF3030 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERISHIVVMGIGEPFDNYNNVLNFVCTIN
.************************ *******:*********************. ***
TIGR4 DDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIE
D39 DDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIE
D39V DDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIE
Hungary19A-6 DDKGMAIGARHITVSTLGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIE
EF3030 DDKGMAIGARHITISTSGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIE
*************:** *******:***********************************
TIGR4 KLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELTELLKNIKKLSYVNLIPYNPVSE
D39 KLFAAIEYYIETTNRRVTFEYIMLNEVNDSVEQALELAELLKNIKKLSYVNLIPYNPVSE
D39V KLFAAIEYYIETTNRRVTFEYIMLNEVNDSVEQALELAELLKNIKKLSYVNLIPYNPVSE
Hungary19A-6 KLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLISYNPVSE
EF3030 KLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSE
*****************************.*******:***************.******
TIGR4 HDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN
D39 HDQYSRSPKERVLAFYDTLKKKGGNCVVRQEYGTDIDAACGQLRSNTMKRDRQKAVAEVN
D39V HDQYSRSPKERVLAFYDTLKKKGGNCVVRQEYGTDIDAACGQLRSNTMKRDRQKAVAEVN
Hungary19A-6 HDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN
EF3030 HDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN
********** ************ *******:************************* **
TIGR4 P
D39 P
D39V P
Hungary19A-6 P
EF3030 P
*