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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001753000
- symbol?: yoaA
- synonym:
- description?: bifunctional DnaQ family exonuclease/ATP-dependent helicase
- bifunctional DnaQ family exonuclease/ATP-dependent helicase
- putative exonuclease
- DnaQ family exonuclease/DinG family helicase, putative
- ATP-dependent DNA helicase
- ATP-dependent helicase DinG
- putative ATP-dependent helicase DinG
- putative DnaQ family exonuclease/DinG family helicase
- 3'-5' exonuclease DinG
- bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
- Bifunctional DinG family ATP-dependent helicase YoaA/DnaQ family exonuclease
- DinG family ATP-dependent helicase YoaA
- DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
- Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG
- exonuclease, DNA polymerase III, epsilon subunit family domain protein
- helicase DinG
- Rad3-related DNA helicase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2196729..2199179
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTG
D39 MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTG
D39V MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTG
Hungary19A-6 MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTG
EF3030 MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTG
************************************************************
TIGR4 LTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVE
D39 LTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVE
D39V LTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVE
Hungary19A-6 LTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVE
EF3030 LTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVE
************************************************************
TIGR4 LAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLRKKMTQLPKGLLERL
D39 LAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKMAQLPKGLLERL
D39V LAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKMAQLPKGLLERL
Hungary19A-6 LAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKMTQLPKGLLERL
EF3030 LAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKMTQLPKGLLERL
**********************************************:**:**********
TIGR4 LEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTEASLEPRKLSQDFSKNISL
D39 LEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTEASLEPRKLSQDFSKNISL
D39V LEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTEASLEPRKLSQDFSKNISL
Hungary19A-6 LEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRKLSQDFSKNISL
EF3030 LEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTEASLEPRKLSQDFSKNISL
***************************************** **** *************
TIGR4 LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTK
D39 LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTK
D39V LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTK
Hungary19A-6 LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTK
EF3030 LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTK
************************************************************
TIGR4 ILQNQIMEEEGKRLKEVFHTDIHSLKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVW
D39 ILQNQIMEEEGKRLKEVFHTDIHSLKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVW
D39V ILQNQIMEEEGKRLKEVFHTDIHSLKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVW
Hungary19A-6 ILQNQIMEEEGKRLKEVFHTDIHSLKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVW
EF3030 ILQNQIMEEEGKRLKEVFHTDIHSLKGPQNYLKLDAFYYSLQENDENRLFRRFKMQVLVW
**************************************:*********************
TIGR4 LTETETGDLDEIGQLYRYQHFLADLRHDGNLSSQSLFVTEDFWKRSQERAETCKLLVTNH
D39 LTETETGDLDEIGQLYRYQHFLADLRHNGNLSSQSLFVTEDFWKRSQERAETCKLLVTNH
D39V LTETETGDLDEIGQLYRYQHFLADLRHNGNLSSQSLFVTEDFWKRSQERAETCKLLVTNH
Hungary19A-6 LTETETGDLDEIGQLYRYQHFLADLRHDGNLSSQSLFVTEDFWKRSQERAETCKLLVTNH
EF3030 LTETETGDLDEIGQLYRYQHFLADLRHDGNLSSQSLFVTEDFWKRSQERAETCKLLVTNH
***************************:********************************
TIGR4 AYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ
D39 AYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ
D39V AYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ
Hungary19A-6 AYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ
EF3030 AYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ
************************************************************
TIGR4 QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEDFDELVRYFTAEGDYW
D39 QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEGFDELVRYFTAEGDYW
D39V QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEGFDELVRYFTAEGDYW
Hungary19A-6 QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEGFDELVRYFTAEGDYW
EF3030 QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVGGFDELVRYFTAEGDYW
******************************************* .***************
TIGR4 LEVTETSQKKIQISSTKSGRTLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFV
D39 LEVTETSQKKIQISSTKSGRTLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFV
D39V LEVTETSQKKIQISSTKSGRTLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFV
Hungary19A-6 LEVTETSQKKIQISSTKSGRTLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFV
EF3030 LEVTETSQKKIQISSTKSGRTLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFV
************************************************************
TIGR4 KIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEIQAFQQPILVLFTAKDMLLAV
D39 KIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEIQAFQQPILVLFTAKDMLLAV
D39V KIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEIQAFQQPILVLFTAKDMLLAV
Hungary19A-6 KIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEIQAFQQPILVLFTAKDMLLAV
EF3030 KIESRGKQEQEVVMVKDFPLVTETSLEVYAREVATLLVEIQAFQQPILVLFTAKDMLLAV
**********************************:*************************
TIGR4 SDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPSVIQVVPRLPFQ
D39 SDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQ
D39V SDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQ
Hungary19A-6 SDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQ
EF3030 SDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQ
************************************************ ***********
TIGR4 NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIVG
D39 NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIIG
D39V NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIIG
Hungary19A-6 NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIVG
EF3030 NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIVG
**********************************************************:*
TIGR4 KRYGKQIVASLAEEATVKTISRSEVDEAIDRFFNEL
D39 KRYGKQIVASLAEEATVKTISRSEVDEAIDRFFNEL
D39V KRYGKQIVASLAEEATVKTISRSEVDEAIDRFFNEL
Hungary19A-6 KRYGKQIVASLAEEATVKTISRSEVDEAIDRFFNEL
EF3030 KRYGKQIVASLAEEATIKTISRSEVDEAIDRFFNEL
****************:*******************