PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001813000
• symbol^?: rpsA
• synonym:
• description^?: 30S Ribosomal protein S1

  descriptions from strain specific annotations:

  • 30S Ribosomal protein S1
  • putative 30S ribosomal protein S1
  • putative 30S ribosomal protein S1 homolog
  • ribosomal protein S1
  • SSU ribosomal protein S1p
  • putative 30S ribosomal protein S1 like
  • putative 30S ribosomal protein S1-like protein
• strand^?: +
• coordinates^?: 2274180..2275382
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS04235 (rpsA)
(2)
D39:
SPD_RS04060 (rpsA)
(2)
D39V:
SPV_RS04055 (rpsA)
(19A)
Hungary19A-6:
SPH_RS04655 (rpsA)
(19F)
EF3030:
EF3030_RS04070 (rpsA)
(6B)^?
670-6B:
SP670_RS07245 (rpsA)
(6A)
6A-10:
HKM25_RS04025 (rpsA)
(5)
70585:
SP70585_RS04440 (rpsA)
(19F)
A026:
T308_RS06415 (rpsA)
(3)
A66:
A66_RS03895 (rpsA)
(11A)
AP200:
SPAP_RS04130 (rpsA)
(12F)
ASP0581:
EL334_RS04245 (rpsA)
(19F)
ATCC 49619:
EL263_RS04255 (rpsA)
(23F)
ATCC 700669:
SPN23F_RS03990 (rpsA)
(19F)
BM6001:
ODS73_RS04475 (rpsA)
(1)
BVJ1JL:
JN057_RS04145 (rpsA)
(14)
CGSP14:
SPCG_RS04185 (rpsA)
(19F)
G54:
SPG_RS03960 (rpsA)
(1)
gamPNI0373:
HMPREF1038_RS04310 (rpsA)
(3)
HU-OH:
EL271_RS03980 (rpsA)
(19A)
Hu15:
SPNHU15_RS04250 (rpsA)
(19A)
Hu17:
SPNHU17_RS04190 (rpsA)
(1)
INV104:
INV104_RS04180 (rpsA)
(14)
INV200:
SPNINV200_RS04070 (rpsA)
(14)
JJA:
SPJ_RS03990 (rpsA)
(19F)
MDRSPN001:
MDRSPN_RS05960 (rpsA)
(1)
NCTC7465:
AT689_RS09510 (rpsA)
(2)
NCTC7466:
DQM66_RS04060 (rpsA)
(4)
NU83127:
EL277_RS04325 (rpsA)
(3)
OXC141:
SPNOXC_RS04155 (rpsA)
(1)
P1031:
SPP_RS04275 (rpsA)
(2)
R6:
SPR_RS03840 (rpsA)
(19A)
SP49:
BMJ42_RS04890 (rpsA)
(1)
SPN032672:
SPN032672_RS10445 (rpsA)
(3)
SPN034156:
SPN034156_RS10080 (rpsA)
(3)
SPN034183:
SPN034183_RS04170 (rpsA)
(3)
SPN994038:
SPN994038_RS04090 (rpsA)
(3)
SPN994039:
SPN994039_RS04090 (rpsA)
(3)
SPNA45:
SPNA45_RS06590 (rpsA)
(19F)
ST556:
MYY_RS06860 (rpsA)
(19F)
Taiwan19F-14:
SPT_RS06660 (rpsA)
(19A)
TCH8431/19A:
HMPREF0837_RS07800 (rpsA)
(4)
Xen35:
CXP32_RS04280 (rpsA)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MNEFEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADIND
  D39             MNEFEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADIND
  D39V            MNEFEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADIND
  Hungary19A-6    MNEFEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADIND
  EF3030          MNEFEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADIND
                  ************************************************************
  
  TIGR4           FVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKGTRAVKG
  D39             FVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKGTRAVKG
  D39V            FVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKGTRAVKG
  Hungary19A-6    FVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKGTRAVKG
  EF3030          FVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKGTRAVKG
                  ************************************************************
  
  TIGR4           GLSVEFEGVRGFIPASMLDTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREVVEAAT
  D39             GLSVEFEGVRGFIPASMLDTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREVVEAAT
  D39V            GLSVEFEGVRGFIPASMLDTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREVVEAAT
  Hungary19A-6    GLSVEFEGVRGFIPASMLDTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREVVEAAT
  EF3030          GLSVEFEGVRGFIPASMLDTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREVVEAAT
                  ************************************************************
  
  TIGR4           AAARAEVFGKLAVGDVVTGKVARITSFGAFVDLGGVDGLVHLTELSHERNVSPKSVVTVG
  D39             AAARAEVFGKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVTVG
  D39V            AAARAEVFGKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVTVG
  Hungary19A-6    AAARAEVFGKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVTVG
  EF3030          AAARAEVFGKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVTVG
                  ******************************:*****************************
  
  TIGR4           EEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLP
  D39             EEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLP
  D39V            EEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLP
  Hungary19A-6    EEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLP
  EF3030          EEIEVKILDLNEEEGRVSLSIKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLP
                  ********************:***************************************
  
  TIGR4           GIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEEGQ
  D39             GIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEEGQ
  D39V            GIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEEGQ
  Hungary19A-6    GIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEEGQ
  EF3030          GIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEEGQ
                  ************************************************************
  
  TIGR4           KEEKRAARPRRPRRQEKRDFELPETQTGFSMADLFGDIEL
  D39             KEEKRAARPRRPRRQEKRDFELPETQTGFSMADLFGDIEL
  D39V            KEEKRAARPRRPRRQEKRDFELPETQTGFSMADLFGDIEL
  Hungary19A-6    KEEKRAARPRRPRRQEKRDFELPETQTGFSMADLFGDIEL
  EF3030          KEEKRVARPRRPRRQEKRDFELPETQTGFSMADLFGDIEL
                  *****.**********************************