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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001845000
- symbol?: rizA
- synonym:
- description?: ATP-grasp-domain-containing protein
- ATP-grasp-domain-containing protein
- carbamoyl phosphate synthase large subunit
- conserved hypothetical protein (pseudogene)
- conserved hypothetical protein
- L-arginine-specific L-amino acid ligase
- acetyl-CoA carboxylase biotin carboxylase subunit family protein
- ATP-grasp domain protein
- Carbamoylphosphate synthase large subunit (split gene in MJ)
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2307320..2308491
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MNYLVISPYYPQNFQQFTIELANKGITVLGIGQESYEQLDEPLRNSLTEYFRVDNLENID
D39 MNYLVISPYYPQNFQQFTIELANKGITVLGIGQGSYEQLDEPLRNSLTEYFRVDNLENID
D39V MNYLVISPYYPQNFQQFTIELANKGITVLGIGQGSYEQLDEPLRNSLTEYFRVDNLENID
Hungary19A-6 MNYLVISPYYPQNFQQFTIELANKGITVLGIGQESYEQLDEPLRNSLTEYFRVDNLENID
EF3030 MNYLVISPYYPQNFQQFTIELANKGITVLGIGQESYEQLDEPLRNSLTEYFRVDNLENID
********************************* **************************
TIGR4 EVKRAVAFLFYKHGPIGRIESHNEYWLELDATLREQFNVFGAKPEDLKKTKYKSEMKKLF
D39 EVKRAVAFLFYKHGPIGRIESHNEYWLELDATLREQFNVFGAKPEDLKKTKYKSEMKKLF
D39V EVKRAVAFLFYKHGPIGRIESHNEYWLELDATLREQFNVFGAKPEDLKKTKYKSEMKKLF
Hungary19A-6 EVKRAVAFLFYKHGPIDRIESHNEYWLELDATLREQFNVFGAKPEDLKKTKYKSEMKKLF
EF3030 EVKRAVAFLFYKHGPIGRIESHNEYWLELDATLREQFNVFGAKPEDLKKTKYKSEMKKLF
****************.*******************************************
TIGR4 KKAGVPVVPGAVIKTEADVDQAVKEIGLPMIAKPDNGVGAAATFKLETEDDINHFKQEWD
D39 KKAGVPVVPGAVIKTEADVDQAVKEIGLPMIAKPDNGVGAAATFKLETEDDINHFKQEWD
D39V KKAGVPVVPGAVIKTEADVDQAVKEIGLPMIAKPDNGVGAAATFKLETEDDINHFKQEWD
Hungary19A-6 KKAGVPVVPGAVIKTEADVDQAVKEIGLPMIAKPDNGVGAAATFKLKTEDDINHFKQEWD
EF3030 KKAGVPVVPGAVIKTEADVDQAVKEIGLPMIAKPDNGVGAAATFKLETEDDINHFKQEWD
**********************************************:*************
TIGR4 HSTLYFFEKFVTSSEICTFDGLVDKDGKIVFSTTFDYAYTPLDLMIYKMDNSYYVLKDMD
D39 HSTLYFFEKFVTSSEICTFDGLVDKDGKIVFSTTFDYAYTPLDLMIYKMDNSYYVLKDMD
D39V HSTLYFFEKFVTSSEICTFDGLVDKDGKIVFSTTFDYAYTPLDLMIYKMDNSYYVLKDMD
Hungary19A-6 HSTLYFFEKFVTSSEICTFDGLVDKDGKIVFSTTFDYAYTPLDLMIYKMDNSYYVLKDMD
EF3030 HSTLYFFEKFVTSSEICTFDGLVDKDGKIVFSTTFDYAYTPLDLMIYKMDNSYYVLKDMD
************************************************************
TIGR4 PKLRKYGEAIVKEFGMKERFFHIEFFREGDDYITIEYNNRPAGGFTIDVYNFAHSLDLYR
D39 PKLRKYGEAIVKEFGMKERFFHIEFFREGDDYITIEYNNRPAGGFTIDVYNFAHSLDLYR
D39V PKLRKYGEAIVKEFGMKERFFHIEFFREGDDYITIEYNNRPAGGFTIDVYNFAHSLDLYR
Hungary19A-6 PKLRKYGEAIVKEFGMKERFFHIEFFREGDDYITIEYNNRPAGGFTIDVYNFAHSLDLYR
EF3030 PKLRKYGEAIVKEFGMKERFFHIEFFREGDDYITIEYNNRPAGGFTIDVYNFAHSLDLYR
************************************************************
TIGR4 GYAAIVAGEEFPASDFETQYCLATSRRANAHYVYSEEDLLAKYSQQFKVKKVMPAAFAEL
D39 GYAAIVAGEEFPASDFETQYCLATSRRANAHYVYSEEDLLAKYSQQFKVKKVMPAAFAEL
D39V GYAAIVAGEEFPASDFETQYCLATSRRANAHYVYSEEDLLAKYSQQFKVKKVMPAAFAEL
Hungary19A-6 GYAAIVAGEEFLASDFETQYCLATSRRANAHYVYSEEDLLAKYSQQFKVKKVMPAAFAEL
EF3030 GYAAIVAGEEFPASDFETQYCLATSRRANAHYVYSEEDLLAKYSQQFKVKKVMPAAFAEL
*********** ************************************************
TIGR4 QGDYLYMLTTPSRQEMEQMIADFGQRQE
D39 QGDYLYMLTTPSRQEMEQMIADFGQRQE
D39V QGDYLYMLTTPSRQEMEQMIADFGQRQE
Hungary19A-6 QGDYLYMLTTPSRQEMDQMIADFGQRQE
EF3030 QGDYLYMLTTPSRQEMEQMIADFGQRQE
****************:***********