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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001992000
- symbol?: rocS
- synonym:
- description?: chromosome segregation protein RocS
- chromosome segregation protein RocS
- putative DNA-binding protein
- protein of unknown function
- conserved hypothetical protein
- DNA-binding protein
- DUF536 domain-containing protein
- Transcriptional regulator OrfX
- Regulator of Chromosome Segregation
- winged helix-turn-helix DNA-binding family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2457344..2457835
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS04960 (rocS)
(19F)
ATCC 49619:
EL263_RS04920 (rocS)
(23F)
ATCC 700669:
SPN23F_RS04670 (rocS)
(14)
INV200:
SPNINV200_RS04880 (rocS)
(14)
JJA:
SPJ_RS04670 (rocS)
(19F)
MDRSPN001:
MDRSPN_RS05290 (rocS)
(19A)
SP49:
BMJ42_RS05505 (rocS)
(1)
SPN032672:
SPN032672_RS11255 (rocS)
(3)
SPN034156:
SPN034156_RS10735 (rocS)
(3)
SPN034183:
SPN034183_RS04855 (rocS)
(3)
SPN994038:
SPN994038_RS04765 (rocS)
(3)
SPN994039:
SPN994039_RS04770 (rocS)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MSIEMTVSEIAEVLGLSRQAINNRVKELPEEDTDKNDKGVTVVTRSGLIKLEEIYKKTIF
D39 MSIEMTVSEIAEVLGLSRQAINNRVKELPEEDTDKNDKGVTVVTRSGLIKLEEIYKKTIF
D39V MSIEMTVSEIAEVLGLSRQAINNRVKELPEEDTDKNDKGVTVVTRSGLIKLEEIYKKTIF
Hungary19A-6 MSIEMTVSEIAEVLGLSRQAINNRVKELPEEDTDKNDKGVTVVTRSGLIKLEEIYKKTIF
EF3030 MSIEMTVSEIAEVLGLSRQAINNRVKELPEEDTDKNDKGVTVVTRSGLIKLEEIYKKTIF
************************************************************
TIGR4 EDEPVSEDVKQRELMEILVDEKNAEILRLYEQLKAKDRQLSEKDEQMRIKDRQIAEKDKQ
D39 EDEPVSEDVKQRELMEILVDEKNAEILRLYEQLKAKDRQLSEKDEQMRIKDRQIAEKDKQ
D39V EDEPVSEDVKQRELMEILVDEKNAEILRLYEQLKAKDRQLSEKDEQMRIKDRQIAEKDKQ
Hungary19A-6 EDEPVSEDVKQRELMEILVDEKNAEILRLYEQLKAKDRQLSEKDEQMRIKDRQIAEKDKQ
EF3030 EDEPVSEDVKQRELMEILVDEKNAEILRLYEQLKAKDRQLSEKDEQMRIKDRQIAEKDKQ
************************************************************
TIGR4 LDQQQQLTLQAMKDQENLKLELDQAKEEVQSTKKGFFARLFGG
D39 LDQQQQLTLQAMKDQENLKLELDQAKEEVQSTKKGFFARLFGG
D39V LDQQQQLTLQAMKDQENLKLELDQAKEEVQSTKKGFFARLFGG
Hungary19A-6 LDQQQQLTLQAMKDQENLKLELDQAKEEVQSTKKGFFARLFGG
EF3030 LDQQQQLTLQAMKDQENLKLELDQAKEEVQSTKKGFFARLFGG
*******************************************