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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002017000
- symbol?: phtB
- synonym:
- description?: pneumococcal-type histidine triad protein
- pneumococcal-type histidine triad protein
- putative streptococcal histidine triad protein PhpA
- pneumococcal histidine triad protein B
- Histidine Motif-Containing protein
- pneumococcal histidine triad protein PhtB
- pneumococcal histidine triad protein D truncation
- conserved domain protein
- histidine triad protein
- pneumococcal-type histidine triad potion
- Streptococcal histidine triad protein (pseudogene)
- streptococcal histidine triad protein PhpA
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2496799..2496799
- occurrence?: in 60% of 43 strains
⊟Orthologs[edit | edit source]
Hungary19A-6:
—
EF3030:
—
A026:
—
A66:
—
AP200:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKINKKYLAGSVAVLALSVCSYELGRYQAGQDKKESNRVAYIDGDQAGQKAENLTPDEVS
D39 MKINKKYLAGSVATLVLSVCAYELGLHQA-QTVKENNRVSYIDGKQATQKTENLTPDEVS
D39V MKINKKYLAGSVATLVLSVCAYELGLHQA-QTVKENNRVSYIDGKQATQKTENLTPDEVS
*************.*.****:**** :** * **.***:****.** **:*********
TIGR4 KREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVN
D39 KREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDEDIIS
D39V KREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDEDIIS
*******************************************************.**:.
TIGR4 EIKGGYVIKVNGKYYVYLKDAAHADNIRTKEEIKRQKQERSHNHNS---RADNAVAAARA
D39 EIKGGYVIKVDGKYYVYLKDAAHADNVRTKEEINRQKQEHSQHREGGTPRNDGAVALARS
D39V EIKGGYVIKVDGKYYVYLKDAAHADNVRTKEEINRQKQEHSQHREGGTPRNDGAVALARS
**********:***************:******:*****:*::::. * *.*** **:
TIGR4 QGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNELSASELAAAEAYWNG-----
D39 QGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNELSASELAAAKAFLSGRGNLS
D39V QGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNELSASELAAAKAFLSGRGNLS
*************************************************:*: .*
TIGR4 ------KQGSRPSSSSSYNANPAQPRLSENHNLTVTPTYHQ-NQGENISSLLRELYAKPL
D39 NSRTYRRQNSDNTSRTNWVPSVSNPGTTNTNTSNNSNTNSQASQSNDIDSLLKQLYKLPL
D39V NSRTYRRQNSDNTSRTNWVPSVSNPGTTNTNTSNNSNTNSQASQSNDIDSLLKQLYKLPL
:*.* :* :.: .. ::* ::.:. . : * * .*.::*.***::** **
TIGR4 SERHVESDGLIFDPAQITSRTARGVAVPHGNHYHFIPYEQMSELEKRIARIIPLRYRSNH
D39 SQRHVESDGLIFDPAQITSRTANGVAVPHGDHYHFIPYSQLSPLEEKLARIIPLRYRSNH
D39V SQRHVESDGLIFDPAQITSRTANGVAVPHGDHYHFIPYSQLSPLEEKLARIIPLRYRSNH
*:********************.*******:*******.*:* **:::************
TIGR4 WVPDSRPEEPSPQPTPEPSPS------PQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVS
D39 WVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVP
D39V WVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVP
********:****.******* ********************************.
TIGR4 RYIPAKDLSAETAAGIDSKLAKQESLSHKLGTKKTDLPSSDREFYNKAYDLLARIHQDLL
D39 RYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLL
D39V RYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLL
*******************************:****************************
TIGR4 DNKGRQVDFEALDNLLERLKDVSSDKVKLVEDILAFLAPIRHPERLGKPNAQITYTDDEI
D39 DNKGRQVDFEALDNLLERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEI
D39V DNKGRQVDFEALDNLLERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEI
******************************:*****************************
TIGR4 QVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKE
D39 QVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKE
D39V QVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKE
************************************************************
TIGR4 KGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYD
D39 KGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYD
D39V KGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYD
************************************************************
TIGR4 HYHNIKFEWFDEGLYEAPKGYTLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNG
D39 HYHNIKFEWFDEGLYEAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNG
D39V HYHNIKFEWFDEGLYEAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNG
*********************:**************************************
TIGR4 QADTNQTEKPSEEKPQTEKPEEETPREEKPQSEKPES------------------PKPTE
D39 QADTNQTEKPNEEKPQTEKPEEETPREEKPQSEKPES------------------PKPTE
D39V QADTNQTEKPNEEKPQTEKPEEDKEHDEVSEPTHPESDEKENHVGLNPSADNLYKPSTDT
**********.***********:. ::* .:. :*** *..
TIGR4 E-----PEESPEESEEPQVETEKVEEKLREAEDLLGKIQDPIIKSNAKETLTGLKNNLLF
D39 EPEEESPEESPEESEEPQVETEKVKEKLREAEDLLGKIQNPIIKSNAKETLTGLKNNLLF
D39V EETEEEAEDTTDEAEIPQVEHSVINAKIAEAEALLEKVTDSSIRQNAVETLTGLKSSLLL
* .*::.:*:* **** . :: *: *** ** *: :. *:.** *******..**:
TIGR4 GTQDNNTIMAEAEKLLALLKESK-----
D39 GTQDNNTIMAEAEKLLALLKESK-----
D39V GTKDNNTISAEVDSLLALLKESQPTPIQ
**:***** **.:.********: