PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN002047000
• symbol^?: glyA
• synonym:
• description^?: serine hydroxymethyltransferase

  descriptions from strain specific annotations:

  • serine hydroxymethyltransferase
  • glycine hydroxymethyltransferase
  • beta-eliminating lyase family protein
  • Glycine/serine hydroxymethyltransferase
• strand^?: +
• coordinates^?: 2534240..2535496
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS05085 (glyA)
(2)
D39:
SPD_RS04890 (glyA)
(2)
D39V:
SPV_RS05450 (glyA)
(19A)
Hungary19A-6:
SPH_RS05460 (glyA)
(19F)
EF3030:
EF3030_RS04950 (glyA)
(6B)^?
670-6B:
SP670_RS06410 (glyA)
(6A)
6A-10:
HKM25_RS04860 (glyA)
(5)
70585:
SP70585_RS05300 (glyA)
(19F)
A026:
T308_RS05055 (glyA)
(3)
A66:
A66_RS04635 (glyA)
(11A)
AP200:
SPAP_RS05810
(12F)
ASP0581:
EL334_RS05125 (glyA)
(19F)
ATCC 49619:
EL263_RS05080 (glyA)
(23F)
ATCC 700669:
SPN23F_RS04825 (glyA)
(19F)
BM6001:
ODS73_RS05285 (glyA)
(1)
BVJ1JL:
JN057_RS04915 (glyA)
(14)
CGSP14:
SPCG_RS05200 (glyA)
(19F)
G54:
SPG_RS04770 (glyA)
(1)
gamPNI0373:
HMPREF1038_RS05730 (glyA)
(3)
HU-OH:
EL271_RS04805 (glyA)
(19A)
Hu15:
SPNHU15_RS05015 (glyA)
(19A)
Hu17:
SPNHU17_RS04940 (glyA)
(1)
INV104:
INV104_RS05180 (glyA)
(14)
INV200:
SPNINV200_RS05045 (glyA)
(14)
JJA:
SPJ_RS04820 (glyA)
(19F)
MDRSPN001:
MDRSPN_RS04650 (glyA)
(1)
NCTC7465:
AT689_RS08700 (glyA)
(2)
NCTC7466:
DQM66_RS05460 (glyA)
(4)
NU83127:
EL277_RS05165 (glyA)
(3)
OXC141:
SPNOXC_RS04995 (glyA)
(1)
P1031:
SPP_RS05095 (glyA)
(2)
R6:
SPR_RS04645 (glyA)
(19A)
SP49:
BMJ42_RS05675 (glyA)
(1)
SPN032672:
SPN032672_RS00050 (glyA)
(3)
SPN034156:
SPN034156_RS00050 (glyA)
(3)
SPN034183:
SPN034183_RS05015 (glyA)
(3)
SPN994038:
SPN994038_RS04920 (glyA)
(3)
SPN994039:
SPN994039_RS04925 (glyA)
(3)
SPNA45:
SPNA45_RS07430
(19F)
ST556:
MYY_RS05535 (glyA)
(19F)
Taiwan19F-14:
SPT_RS05325 (glyA)
(19A)
TCH8431/19A:
HMPREF0837_RS06960 (glyA)
(4)
Xen35:
CXP32_RS05125 (glyA)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MIFDKDDFKAYDADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYP
  D39             MIFDKDDFKAYDADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYP
  D39V            MIFDKDDFKAYDADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYP
  Hungary19A-6    MIFDKDDFKAYDADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYP
  EF3030          MIFDKDDFKAYDADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYP
                  ************************************************************
  
  TIGR4           GRRYYGGTDVVDVVETLAIERAKEIFGAKFANVQPHSGSQANCAAYMSLIEPGDTVMGMD
  D39             GRRYYGGTDVVDVVETLAIERAKEIFGAKFANVQPHSGSQANCAAYMSLIEPGDTVMGMD
  D39V            GRRYYGGTDVVDVVETLAIERAKEIFGAKFANVQPHSGSQANCAAYMSLIEPGDTVMGMD
  Hungary19A-6    GRRYYGGTDVVDVVETLAIERAKEIFGAKFANVQPHSGSQANCAAYISLIEPGDTVMGMD
  EF3030          GRRYYGGTDVVDVVETLAIERAKEIFGAKFANVQPHSGSQANCAAYMSLIEPGDTVMGMD
                  **********************************************:*************
  
  TIGR4           LASGGHLTHGAPVSFSGQTYNFVSYSVDPKTELLDFDAILKQAQEVKPKLIVAGASAYSQ
  D39             LAAGGHLTHGAPVSFSGQTYNFLSYSVDPETELLDFDAILKQAQEVKPKLIVAGASAYSQ
  D39V            LAAGGHLTHGAPVSFSGQTYNFLSYSVDPETELLDFDAILKQAQEVKPKLIVAGASAYSQ
  Hungary19A-6    LASGGHLTHGAPVSFSGQTYNFVSYSVDPETELLDFDAILKQAQEVKPKLIVAGASAYSQ
  EF3030          LASGGHLTHGAPVSFSGQTYNFVSYSVDPETELLDFDAILKQAQEVKPKLIVAGASAYSQ
                  **:*******************:******:******************************
  
  TIGR4           IIDFSKFREIADAVGAKLMVDMAHIAGLVAAGLHPSPVPYAHITTTTTHKTLRGPRGGLI
  D39             IIDFSKFREIADAVGAKLMVDMAHIAGLVAAGLHPSPVPYAHITTTTTHKTLRGPRGGLI
  D39V            IIDFSKFREIADAVGAKLMVDMAHIAGLVAAGLHPSPVPYAHITTTTTHKTLRGPRGGLI
  Hungary19A-6    IIDFSKFREIADAVGAKLMVDMAHIAGLVAAGLHPSPVPYAHITTTTTHKTLRGPRGGLI
  EF3030          IIDFSKFREIADAVGAKLMVDMAHIAGLVAAGLHPSPVPYAHITTTTTHKTLRGPRGGLI
                  ************************************************************
  
  TIGR4           LTNDEELAKKINSAIFPGIQGGPLEHVVAAKAVSFKEVLDPAFKEYAANVIKNSKAMADV
  D39             LTNDEELAKKINSAIFPGIQGGPLEHVVAAKAVSFKEVLDPAFKEYAANVIKNSKAMADV
  D39V            LTNDEELAKKINSAIFPGIQGGPLEHVVAAKAVSFKEVLDPAFKEYAANVIKNSKAMADV
  Hungary19A-6    LTNDEELAKKINSAIFPGIQGGPLEHVVAAKAVSFKEVLDPAFKEYAANVIKNSKAMADV
  EF3030          LTNDEELAKKINSAIFPGIQGGPLEHVVAAKAVSFKEVLDPAFKEYAANVIKNSKAMADV
                  ************************************************************
  
  TIGR4           FLQDPDFRIISGGTENHLFLVDVTKVVENGKVAQNLLDEVNITLNKNSIPYESLSPFKTS
  D39             FLQDPDFRIISGGTENHLFLVDVTKVVENGKVAQNLLDEVNITLNKNSIPYETLSPFKTS
  D39V            FLQDPDFRIISGGTENHLFLVDVTKVVENGKVAQNLLDEVNITLNKNSIPYETLSPFKTS
  Hungary19A-6    FLQDPDFRIISGGTENHLFLVDVTKVVENGKVAQNLLDEVNITLNKNSIPYETLSPFKTS
  EF3030          FLQDPDFRIISGGTENHLFLVDVTKVVENGKVAQNLLDEVNITLNKNSIPYESLSPFKTS
                  ****************************************************:*******
  
  TIGR4           GIRIGAAAITARGFGEEESRKVAELIIKTLKNSENEAVLEEVRSAVKELTDAFPLYED
  D39             GIRIGAAAITARGFGEEESRKVAELIIKTLKNSENEAVLEEVRSAVKELTDAFPLYED
  D39V            GIRIGAAAITARGFGEEESRKVAELIIKTLKNSENEAVLEEVRSAVKELTDAFPLYED
  Hungary19A-6    GIRIGAAAITARGFGEEESRKVAELIIKTLKNSENEAVLEEVRSAVKELTDAFPLYEE
  EF3030          GIRIGAAAITARGFGEEESRKVAELIIKTLKNSENEAVLEEVRSAVKELTDAFLLYED
                  ***************************************************** ***: