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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002048000
- symbol?: phtB
- synonym: phtD
- description?: pneumococcal histidine triad protein PhtD
- pneumococcal histidine triad protein PhtD
- pneumococcal histidine triad protein B
- pneumococcal-type histidine triad protein
- Pneumococcal histidine triad protein
- pneumococcal histidine triad protein D (bvh-11-2)
- conserved hypothetical protein
- histidine motif-containing protein
- histidine triad protein
- pneumococcal histidine triad protein D
- pneumococcal histidine triad protein D truncation
- Streptococcal histidine triad protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2407131..2407131
- occurrence?: in 59% of 41 strains
⊟Orthologs[edit | edit source]
gamPNI0373:
—
HU-OH:
—
Hu15:
—
SPN034156:
—
SPN034183:
—
SPN994038:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKINKKYLAGSVAVLALSVCSYELGRHQAGQVKKESNRVSYIDGDQAGQKAENLTPDEVS
D39V MKINKKYLAGSVATLVLSVCAYELGLHQA-QTVKENNRVSYIDGKQATQKTENLTPDEVS
Hungary19A-6 MKINKKYLAGSVAVLALSVCSYELGRHQAGQVKKESNRVSYIDGDQAGQKAENLTPDEVS
EF3030 MKINKKYLAGSVAVLALSVCSYELGRHQAGQVKKESNRVSYIDGDQAGQKAENLTPDEVS
*************.*.****:**** *** *. **.********.** **:*********
TIGR4 KREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVN
D39V KREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDEDIIS
Hungary19A-6 KREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVN
EF3030 KREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVN
*******************************************************.**:.
TIGR4 EIKGGYVIKVDGKYYVYLKDAAHADNIRTKEEIKRQKQEHSHNHGGGS--NDQAVVAARA
D39V EIKGGYVIKVDGKYYVYLKDAAHADNVRTKEEINRQKQEHSQHREGGTPRNDGAVALARS
Hungary19A-6 EIKGGYVIKVNGKYYVYLKDAAHADNIRTKEEIKRQKQEHSHNHGGGS--NDQAVVAARA
EF3030 EIKGGYVIKVDEKYYVYLKDAAHADNIRTKEEIKRQKQEHSHNHGGGS--NDQAVVAARA
**********: **************:******:*******::: **: ** **. **:
TIGR4 QGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNELSASELAAAEAYWNG-----
D39V QGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNELSASELAAAKAFLSGRGNLS
Hungary19A-6 QGRYTTDDGYIFNASDIIEDTGDAYIVPHGNHFHYIPKSDLSASELAAAQAYWNG-----
EF3030 QGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNELSASELAAAEAYWNG-----
******************************:*:*****.:*********:*: .*
TIGR4 ------KQGSRPSSSSSYNANPAQPRLSENHNLTVTPTYHQ-NQGENISSLLRELYAKPL
D39V NSRTYRRQNSDNTSRTNWVPSVSNPGTTNTNTSNNSNTNSQASQSNDIDSLLKQLYKLPL
Hungary19A-6 ------KQGSRPSSSSSHNANPAQPRLSENHNLTVTPTYHQ-NQGENISSLLRELYAKPL
EF3030 ------KQGSRPSSSSSHNANPAQPRLSENHNLTVTPTYHQ-NQGENISSLLRELYAKPL
:*.* :* :. .. ::* ::.:. . : * * .*.::*.***::** **
TIGR4 SERHVESDGLIFDPAQITSRTARGVAVPHGNHYHFIPYEQMSELEKRIARIIPLRYRSNH
D39V SQRHVESDGLIFDPAQITSRTANGVAVPHGDHYHFIPYSQLSPLEEKLARIIPLRYRSNH
Hungary19A-6 SERHVESDGLIFDPAQITSRTARGVAVPHGNHYHFIPYEQMSELEERIARIIPLRYRSNH
EF3030 SERHVESDGLIFDPAQITSRTARGVAVPHGNHYHFIPYEQMSELEKRIARIIPLRYRSNH
*:********************.*******:*******.*:* **:::************
TIGR4 WVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVS
D39V WVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVP
Hungary19A-6 WVPDSRPEQPSPQPTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVS
EF3030 WVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVS
*************.*********************************************.
TIGR4 RYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLL
D39V RYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLL
Hungary19A-6 RYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLL
EF3030 RYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLL
************************************************************
TIGR4 DNKGRQVDFEALDNLLERLKDVPSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEI
D39V DNKGRQVDFEALDNLLERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEI
Hungary19A-6 DNKGRQVDFEALDNLLERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNSQITYTDDEI
EF3030 DNKGRQVDFEALDNLLERFKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEI
******************:***.***************************:*********
TIGR4 QVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKE
D39V QVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKE
Hungary19A-6 QVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKE
EF3030 QVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKE
************************************************************
TIGR4 KGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYD
D39V KGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYD
Hungary19A-6 KGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYD
EF3030 KGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYD
************************************************************
TIGR4 HYHNIKFEWFDEGLYEAPKGYTLEDLLATVKYYVEHPNERPHSDNGFGNASDHVRKNK--
D39V HYHNIKFEWFDEGLYEAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNG
Hungary19A-6 HYHNIKFEWFDEGLYEAPKGYTLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNG
EF3030 HYHNIKFEWFDEGLYEAPKGYTLEDLLATVKYYVEHPNERPHSDNGFGNASDHVRKNK--
*********************:********************************::**
TIGR4 -------------VDQDSKPDEDKEHDEVSEPTHPESDEKENHAGLNPSADNLYKPSTDT
D39V QADTNQTEKPNEEKPQTEKPEEDKEHDEVSEPTHPESDEKENHVGLNPSADNLYKPSTDT
Hungary19A-6 QADTNQT-----EKPQTEKPEEDKEHDEVSEPTHPESDEKENHAGLNPSADNLYKPSTDT
EF3030 -------------ADQDSKPEEDKEHDEVSEPTHPESDEKENHAGLNPSADNLYKPSTDT
* .**:**********************.****************
TIGR4 EETEEEAEDTTDEAEIPQVENSVINAKIADAEALLEKVTDPSIRQNAMETLTGLKSSLLL
D39V EETEEEAEDTTDEAEIPQVEHSVINAKIAEAEALLEKVTDSSIRQNAVETLTGLKSSLLL
Hungary19A-6 EETEEEAEDTTDEAEIPQVEHSVINAKIAEAEALLEKVTDSSIRQNAMETLTGLKSSLLL
EF3030 EETEEEAEDTTDEAEIPQVEHSVINAKIAEAETLLEKVTDSSIRQNAVETLTGLKSSLLL
********************:********:**:*******.******:************
TIGR4 GTKDNNTISAEVDSLLALLKESQPAPIQ
D39V GTKDNNTISAEVDSLLALLKESQPTPIQ
Hungary19A-6 GTKDNNTISAEVDSLLALLKESQPAPIQ
EF3030 GTKDNNTISAEVDSLLALLKESQPTPIQ
************************:***