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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002049000
- symbol?: pvaA
- synonym: pmp23
- description?: cell wall hydrolase Pmp23
- cell wall hydrolase Pmp23
- Pneumococcal vaccine antigen A
- putative membrane protein
- conserved hypothetical protein
- lysozyme family protein
- lysozyme-like family protein
- Pneumococcal vaccine antigen A homolog
- putative pneumococcal vaccine antigen A
- Soluble lytic murein transglycosylase-like regulatory protein
- vaccine antigen A
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2536478..2537092
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS05135 (pmp23)
(19F)
ATCC 49619:
EL263_RS05090 (pmp23)
(23F)
ATCC 700669:
SPN23F_RS04835 (pmp23)
(19F)
G54:
SPG_RS04780 (pmp23)
(1)
gamPNI0373:
HMPREF1038_RS05720 (pmp23)
(3)
HU-OH:
EL271_RS04815 (pmp23)
(19A)
Hu15:
SPNHU15_RS05025 (pmp23)
(19A)
Hu17:
SPNHU17_RS04950 (pmp23)
(1)
INV104:
INV104_RS05190 (pmp23)
(14)
INV200:
SPNINV200_RS05055 (pmp23)
(14)
JJA:
SPJ_RS04830 (pmp23)
(19F)
MDRSPN001:
MDRSPN_RS04660 (pmp23)
(1)
NCTC7465:
AT689_RS08690 (pmp23)
(2)
NCTC7466:
DQM66_RS05450 (pmp23)
(4)
NU83127:
EL277_RS05175 (pmp23)
(19A)
SP49:
BMJ42_RS05685 (pmp23)
(1)
SPN032672:
SPN032672_RS00060 (pmp23)
(3)
SPN034156:
SPN034156_RS00060 (pmp23)
(3)
SPN034183:
SPN034183_RS05025 (pmp23)
(3)
SPN994038:
SPN994038_RS04930 (pmp23)
(3)
SPN994039:
SPN994039_RS04935 (pmp23)
(3)
SPNA45:
SPNA45_RS07440 (pmp23)
(19F)
ST556:
MYY_RS05545 (pmp23)
(19F)
Taiwan19F-14:
SPT_RS05335 (pmp23)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MFKRIRRVLVLAVFLFAGYKAYRVHQDVKQVMTYQPMVREILSEQDTPANEELVLAMIYT
D39 MFKRIRRVLVLAVFLFAGYKAYRVHQDVKQVMTYQPMVREMLSEKDTPANEELVLAMIYT
D39V MFKRIRRVLVLAVFLFAGYKAYRVHQDVKQVMTYQPMVREMLSEKDTPANEELVLAMIYT
Hungary19A-6 MFKRIRRVLVLAVFLFAGYKAYRVHQDVKQVMTYQPMVREILSEKDTPANEELVLAMIYT
EF3030 MFKRIRRVLVLAVFLFAGYKAYRVHQDVKQVMTYQPMVREILSEKDTPANEELVLAMIYT
****************************************:***:***************
TIGR4 ETKGKEGDVMQSSESASGSTNTINDNASSIRQGIQTLTGNLYLAQKKGVDIWTAVQAYNF
D39 ETKGKEGDVMQSSESASGSTNTINDNASSIRQGIQTLTGNLYLAQKKGVDIWTAVQAYNF
D39V ETKGKEGDVMQSSESASGSTNTINDNASSIRQGIQTLTGNLYLAQKKGVDIWTAVQAYNF
Hungary19A-6 ETKGKEGDVMQSSESASGSTNTINDNASSIRQGIQTLTGNLYLAQKKGVDIWTAVQAYNF
EF3030 ETKGKEGDVMQSSESASGSTNTINDNASSIRQGIQTLTGNLYLAQKKGVDIWTAVQAYNF
************************************************************
TIGR4 GPAYIDFIAQNGKENTLALAKQYSRETVAPLLGNRTGKTYSYIHPISIFHGAELYVNGGN
D39 GPAYIDFIAQNGKENTLALAKQYSRETVAPLLGNRTGKTYSYIHPISIFHGAELYVNGGN
D39V GPAYIDFIAQNGKENTLALAKQYSRETVAPLLGNRTGKTYSYIHPISIFHGAELYVNGGN
Hungary19A-6 GPAYIDFIAQNGKENTLALAKQYSRETVAPLLGNTTGKTYSYIHPISIFHGAELYVNGGN
EF3030 GPAYIDFIAQNGKENTLALAKQYSRETVAPLLGNTTGKTYSYIHPISIFHGAELYVNGGN
********************************** *************************
TIGR4 YYYSRQVRLNLYIIKCFTLFSTSG
D39 YYYSRQVRLNLYIIKCFTLFSTSG
D39V YYYSRQVRLNLYIIKCFTLFSTSG
Hungary19A-6 YYYSRQVRLNLYIIKCFTLFSTSG
EF3030 YYYSRQVRLNLYIIKCFTLFSTSG
************************