Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 05-APR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae JJA
- locus tag: SPJ_RS04830 [old locus tag: SPJ_0965 ]
- pan locus tag?: PNEUPAN002049000
- symbol: pmp23
- pan gene symbol?: pvaA
- synonym:
- product: cell wall hydrolase Pmp23
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPJ_RS04830 [old locus tag: SPJ_0965 ]
- symbol: pmp23
- product: cell wall hydrolase Pmp23
- replicon: chromosome
- strand: +
- coordinates: 921670..922284
- length: 615
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_012466 (921670..922284) NCBI
- BioCyc: SPJ_RS04830 BioCyc
- MicrobesOnline: see SPJ_0965
- PneumoBrowse for strain D39V: SPV_0912 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601ATGTTTAAACGAATTCGAAGAGTGCTTGTACTAGCAGTCTTCCTTTTTGCTGGCTATAAA
GCTTACCGCGTTCATCAAGATGTCAAACAAGTCATGACCTATCAACCCATGGTGCGAGAA
ATATTGAGTGAAAAAGACACCCCAGCAAACGAAGAGCTTGTGCTTGCTATGATTTATACT
GAAACAAAAGGAAAAGAAGGCGATGTTATGCAGTCTAGTGAGTCTGCAAGTGGTTCCACC
AACACCATCAATGATAATGCCTCTAGCATTCGGCAAGGCATTCAAACTCTGACAGGCAAT
CTCTATCTGGCGCAGAAGAAGGGTGTAGATATCTGGACAGCTGTTCAAGCCTATAATTTT
GGACCTGCCTATATCGATTTTATCGCCCAAAATGGCAAGGAAAATACCTTGGCTCTAGCC
AAACAGTACTCTCGTGAGACTGTTGCCCCCTTGCTTGGTAATAGGACTGGAAAGACTTAT
AGTTATATTCACCCCATTTCCATTTTTCACGGTGCTGAACTCTATGTAAATGGAGGAAAC
TATTATTATTCTAGACAGGTACGACTTAACCTTTACATCATCAAATGTTTCACTCTCTTT
TCAACATCTGGCTAG60
120
180
240
300
360
420
480
540
600
615
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPJ_RS04830 [old locus tag: SPJ_0965 ]
- symbol: Pmp23
- description: cell wall hydrolase Pmp23
- length: 204
- theoretical pI: 9.5801
- theoretical MW: 22970.1
- GRAVY: -0.217647
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SPJ_0965
- PFAM: Lysozyme (CL0037) Lysozyme_like; Lysozyme-like (PF13702; HMM-score: 222.2)and 1 moreSLT; Transglycosylase SLT domain (PF01464; HMM-score: 12.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 0
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0087
- Cytoplasmic Membrane Score: 0.6403
- Cell wall & surface Score: 0.0058
- Extracellular Score: 0.3452
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.227193
- TAT(Tat/SPI): 0.003234
- LIPO(Sec/SPII): 0.142941
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MFKRIRRVLVLAVFLFAGYKAYRVHQDVKQVMTYQPMVREILSEKDTPANEELVLAMIYTETKGKEGDVMQSSESASGSTNTINDNASSIRQGIQTLTGNLYLAQKKGVDIWTAVQAYNFGPAYIDFIAQNGKENTLALAKQYSRETVAPLLGNRTGKTYSYIHPISIFHGAELYVNGGNYYYSRQVRLNLYIIKCFTLFSTSG
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SPJ_RS04795 > prfA > prmC > SPJ_RS04810 > SPJ_RS04815 > glyA > SPJ_RS04825 > pmp23 > SPJ_RS04835 > rlmD
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0912 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]